Cluster: HRGMv2_4187_CGC3
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4187
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4187_10 | HRGMv2_4187_10_30 | 30675 | 31748 | - | GT28 |
| TC | HRGMv2_4187_10 | HRGMv2_4187_10_31 | 31763 | 32887 | - | 2.A.103.1.1 |
| pfam | HRGMv2_4187_10 | HRGMv2_4187_10_32 | 32884 | 34233 | - | Mur_ligase_C | Mur_ligase_M | MurD-like_N |
| TC | HRGMv2_4187_10 | HRGMv2_4187_10_33 | 34247 | 35329 | - | 9.B.146.1.6 |
Gene ID: HRGMv2_4187_10_30
Type: CAZyme
Location: 30675 - 31748 (-)
Type: CAZyme
Location: 30675 - 31748 (-)
Gene ID: HRGMv2_4187_10_31
Type: TC
Location: 31763 - 32887 (-)
Type: TC
Location: 31763 - 32887 (-)
Gene ID: HRGMv2_4187_10_32
Type: pfam
Location: 32884 - 34233 (-)
Type: pfam
Location: 32884 - 34233 (-)
Gene ID: HRGMv2_4187_10_33
Type: TC
Location: 34247 - 35329 (-)
Type: TC
Location: 34247 - 35329 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Succinivibrionaceae
Genus
Succinivibrio
Species
Succinivibrio hippei_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.