Cluster: HRGMv2_4187_CGC20
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4187
- CGC Family ID: CGCFAM_04028
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4187_52 | HRGMv2_4187_52_45 | 54446 | 55027 | - | 2.A.107.1.2 |
| STP | HRGMv2_4187_52 | HRGMv2_4187_52_46 | 55162 | 57438 | - | EAL | GGDEF |
| TC | HRGMv2_4187_52 | HRGMv2_4187_52_47 | 57615 | 59792 | - | 4.A.3.2.3 |
| CAZyme | HRGMv2_4187_52 | HRGMv2_4187_52_48 | 60025 | 60726 | + | GT25 |
Gene ID: HRGMv2_4187_52_45
Type: TC
Location: 54446 - 55027 (-)
Type: TC
Location: 54446 - 55027 (-)
Gene ID: HRGMv2_4187_52_46
Type: STP
Location: 55162 - 57438 (-)
Type: STP
Location: 55162 - 57438 (-)
Gene ID: HRGMv2_4187_52_47
Type: TC
Location: 57615 - 59792 (-)
Type: TC
Location: 57615 - 59792 (-)
Gene ID: HRGMv2_4187_52_48
Type: CAZyme
Location: 60025 - 60726 (+)
Type: CAZyme
Location: 60025 - 60726 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Succinivibrionaceae
Genus
Succinivibrio
Species
Succinivibrio hippei_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.