Cluster: HRGMv2_4187_CGC17
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4187
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4187_52 | HRGMv2_4187_52_7 | 5665 | 6681 | - | GH8 |
| pfam | HRGMv2_4187_52 | HRGMv2_4187_52_8 | 6682 | 7149 | - | Cellsynth_D |
| TC | HRGMv2_4187_52 | HRGMv2_4187_52_9 | 7156 | 11526 | - | 1.B.55.3.1 |
| TC | HRGMv2_4187_52 | HRGMv2_4187_52_10 | 11523 | 14105 | - | 4.D.3.1.6 |
| CAZyme | HRGMv2_4187_52 | HRGMv2_4187_52_11 | 14102 | 16249 | - | GT2 |
Gene ID: HRGMv2_4187_52_7
Type: CAZyme
Location: 5665 - 6681 (-)
Type: CAZyme
Location: 5665 - 6681 (-)
Gene ID: HRGMv2_4187_52_8
Type: pfam
Location: 6682 - 7149 (-)
Type: pfam
Location: 6682 - 7149 (-)
Gene ID: HRGMv2_4187_52_9
Type: TC
Location: 7156 - 11526 (-)
Type: TC
Location: 7156 - 11526 (-)
Gene ID: HRGMv2_4187_52_10
Type: TC
Location: 11523 - 14105 (-)
Type: TC
Location: 11523 - 14105 (-)
Gene ID: HRGMv2_4187_52_11
Type: CAZyme
Location: 14102 - 16249 (-)
Type: CAZyme
Location: 14102 - 16249 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Succinivibrionaceae
Genus
Succinivibrio
Species
Succinivibrio hippei_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.