Cluster: HRGMv2_4187_CGC15
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4187
- CGC Family ID: CGCFAM_08224
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4187_38 | HRGMv2_4187_38_91 | 99307 | 100800 | - | 3.A.1.15.8 |
| pfam | HRGMv2_4187_38 | HRGMv2_4187_38_92 | 101175 | 102071 | + | Usp | Usp |
| pfam | HRGMv2_4187_38 | HRGMv2_4187_38_93 | 102287 | 104032 | + | Glft2_N |
| TC | HRGMv2_4187_38 | HRGMv2_4187_38_94 | 104258 | 106081 | + | 3.A.1.106.1 |
| CAZyme | HRGMv2_4187_38 | HRGMv2_4187_38_95 | 106122 | 107291 | + | GT4 |
Gene ID: HRGMv2_4187_38_91
Type: TC
Location: 99307 - 100800 (-)
Type: TC
Location: 99307 - 100800 (-)
Gene ID: HRGMv2_4187_38_92
Type: pfam
Location: 101175 - 102071 (+)
Type: pfam
Location: 101175 - 102071 (+)
Gene ID: HRGMv2_4187_38_93
Type: pfam
Location: 102287 - 104032 (+)
Type: pfam
Location: 102287 - 104032 (+)
Gene ID: HRGMv2_4187_38_94
Type: TC
Location: 104258 - 106081 (+)
Type: TC
Location: 104258 - 106081 (+)
Gene ID: HRGMv2_4187_38_95
Type: CAZyme
Location: 106122 - 107291 (+)
Type: CAZyme
Location: 106122 - 107291 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Succinivibrionaceae
Genus
Succinivibrio
Species
Succinivibrio hippei_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.