Cluster: HRGMv2_4187_CGC1
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4187
- CGC Family ID: CGCFAM_03569
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4187_7 | HRGMv2_4187_7_3 | 1564 | 3768 | + | GH77 |
| CAZyme | HRGMv2_4187_7 | HRGMv2_4187_7_4 | 3798 | 5999 | + | GH13_9 |
| CAZyme | HRGMv2_4187_7 | HRGMv2_4187_7_5 | 6096 | 8246 | + | GH13_11 |
| TC | HRGMv2_4187_7 | HRGMv2_4187_7_6 | 8434 | 10554 | - | 9.B.97.5.1 |
| peptidase | HRGMv2_4187_7 | HRGMv2_4187_7_7 | 10766 | 12808 | - | S49.UPA |
| TC | HRGMv2_4187_7 | HRGMv2_4187_7_8 | 12894 | 13844 | - | 8.A.21.2.1 |
Gene ID: HRGMv2_4187_7_3
Type: CAZyme
Location: 1564 - 3768 (+)
Type: CAZyme
Location: 1564 - 3768 (+)
Gene ID: HRGMv2_4187_7_4
Type: CAZyme
Location: 3798 - 5999 (+)
Type: CAZyme
Location: 3798 - 5999 (+)
Gene ID: HRGMv2_4187_7_5
Type: CAZyme
Location: 6096 - 8246 (+)
Type: CAZyme
Location: 6096 - 8246 (+)
Gene ID: HRGMv2_4187_7_6
Type: TC
Location: 8434 - 10554 (-)
Type: TC
Location: 8434 - 10554 (-)
Gene ID: HRGMv2_4187_7_7
Type: peptidase
Location: 10766 - 12808 (-)
Type: peptidase
Location: 10766 - 12808 (-)
Gene ID: HRGMv2_4187_7_8
Type: TC
Location: 12894 - 13844 (-)
Type: TC
Location: 12894 - 13844 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Succinivibrionaceae
Genus
Succinivibrio
Species
Succinivibrio hippei_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.