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Cluster: HRGMv2_4162_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4162_3 HRGMv2_4162_3_49 53516 55813 + GH3
TC HRGMv2_4162_3 HRGMv2_4162_3_50 55961 56878 + 3.A.1.12.15
TC HRGMv2_4162_3 HRGMv2_4162_3_51 56891 58048 + 3.A.1.12.15
TC HRGMv2_4162_3 HRGMv2_4162_3_52 58041 58988 + 3.A.1.12.15
TC HRGMv2_4162_3 HRGMv2_4162_3_53 58972 59709 + 3.A.1.12.15
NULL(UNKNOWN) HRGMv2_4162_3 HRGMv2_4162_3_54 59684 59797 - NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_4162_3 HRGMv2_4162_3_55 59876 60607 - MerR
TC HRGMv2_4162_3 HRGMv2_4162_3_56 60731 62515 + 9.B.33.1.1
Gene ID: HRGMv2_4162_3_49
Type: CAZyme
Location: 53516 - 55813 (+)
Gene ID: HRGMv2_4162_3_50
Type: TC
Location: 55961 - 56878 (+)
Gene ID: HRGMv2_4162_3_51
Type: TC
Location: 56891 - 58048 (+)
Gene ID: HRGMv2_4162_3_52
Type: TC
Location: 58041 - 58988 (+)
Gene ID: HRGMv2_4162_3_53
Type: TC
Location: 58972 - 59709 (+)
Gene ID: HRGMv2_4162_3_54
Type:
Location: 59684 - 59797 (-)
Gene ID: HRGMv2_4162_3_55
Type: TF
Location: 59876 - 60607 (-)
Gene ID: HRGMv2_4162_3_56
Type: TC
Location: 60731 - 62515 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4162_3_53 vegetarian > vegan 3.37327 0.01976

🧭 Explore Read Mapping of CGC

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