Cluster: HRGMv2_4162_CGC59
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4162
- CGC Family ID: CGCFAM_00796
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4162_52 | HRGMv2_4162_52_19 | 17274 | 17588 | + | 4.A.3.2.6 |
| TC | HRGMv2_4162_52 | HRGMv2_4162_52_20 | 17601 | 18926 | + | 4.A.3.2.6 |
| CAZyme | HRGMv2_4162_52 | HRGMv2_4162_52_21 | 18944 | 20320 | + | GH1 |
| TC | HRGMv2_4162_52 | HRGMv2_4162_52_22 | 20327 | 20629 | + | 4.A.3.2.6 |
| pfam | HRGMv2_4162_52 | HRGMv2_4162_52_23 | 20771 | 22150 | + | LamB |
| TC | HRGMv2_4162_52 | HRGMv2_4162_52_24 | 22401 | 23306 | - | 2.A.7.3.12 |
| NULL(UNKNOWN) | HRGMv2_4162_52 | HRGMv2_4162_52_25 | 23443 | 23817 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4162_52 | HRGMv2_4162_52_26 | 23917 | 25107 | - | 2.A.1.2.26 |
| pfam | HRGMv2_4162_52 | HRGMv2_4162_52_27 | 25229 | 25681 | - | DUF1198 |
| peptidase | HRGMv2_4162_52 | HRGMv2_4162_52_28 | 25849 | 26853 | - | S33.UPW |
| TC | HRGMv2_4162_52 | HRGMv2_4162_52_29 | 27006 | 28397 | - | 2.A.1.4.1 |
Gene ID: HRGMv2_4162_52_19
Type: TC
Location: 17274 - 17588 (+)
Type: TC
Location: 17274 - 17588 (+)
Gene ID: HRGMv2_4162_52_20
Type: TC
Location: 17601 - 18926 (+)
Type: TC
Location: 17601 - 18926 (+)
Gene ID: HRGMv2_4162_52_21
Type: CAZyme
Location: 18944 - 20320 (+)
Type: CAZyme
Location: 18944 - 20320 (+)
Gene ID: HRGMv2_4162_52_22
Type: TC
Location: 20327 - 20629 (+)
Type: TC
Location: 20327 - 20629 (+)
Gene ID: HRGMv2_4162_52_23
Type: pfam
Location: 20771 - 22150 (+)
Type: pfam
Location: 20771 - 22150 (+)
Gene ID: HRGMv2_4162_52_24
Type: TC
Location: 22401 - 23306 (-)
Type: TC
Location: 22401 - 23306 (-)
Gene ID: HRGMv2_4162_52_25
Type:
Location: 23443 - 23817 (+)
Type:
Location: 23443 - 23817 (+)
Gene ID: HRGMv2_4162_52_26
Type: TC
Location: 23917 - 25107 (-)
Type: TC
Location: 23917 - 25107 (-)
Gene ID: HRGMv2_4162_52_27
Type: pfam
Location: 25229 - 25681 (-)
Type: pfam
Location: 25229 - 25681 (-)
Gene ID: HRGMv2_4162_52_28
Type: peptidase
Location: 25849 - 26853 (-)
Type: peptidase
Location: 25849 - 26853 (-)
Gene ID: HRGMv2_4162_52_29
Type: TC
Location: 27006 - 28397 (-)
Type: TC
Location: 27006 - 28397 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Lelliottia
Species
Lelliottia chinensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4162_52_19 | vegetarian > omnivore | 2.27293 | 0.04735 |
| HRGMv2_4162_52_20 | vegetarian > omnivore | 1.39157 | 0.04735 |
| HRGMv2_4162_52_21 | vegetarian > omnivore | 1.50580 | 0.03282 |
| HRGMv2_4162_52_21 | vegetarian > vegan | 1.19180 | 0.01976 |
| HRGMv2_4162_52_22 | vegetarian > omnivore | 1.84112 | 0.04735 |
| HRGMv2_4162_52_22 | vegetarian > vegan | 1.17090 | 0.01976 |
| HRGMv2_4162_52_23 | vegetarian > vegan | 1.51249 | 0.01976 |
| HRGMv2_4162_52_27 | vegetarian > vegan | 1.34787 | 0.01976 |
| HRGMv2_4162_52_28 | vegetarian > vegan | 1.39859 | 0.01976 |