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Cluster: HRGMv2_4162_CGC54

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4162_42 HRGMv2_4162_42_19 16536 17279 - 9.B.158.1.2
pfam HRGMv2_4162_42 HRGMv2_4162_42_20 17356 17916 - YecM
pfam HRGMv2_4162_42 HRGMv2_4162_42_21 18155 19888 + tRNA-synt_1d | Arg_tRNA_synt_N | DALR_1
CAZyme HRGMv2_4162_42 HRGMv2_4162_42_22 19933 21072 - GH105
TC HRGMv2_4162_42 HRGMv2_4162_42_23 21077 22660 - 2.A.2.5.2
pfam HRGMv2_4162_42 HRGMv2_4162_42_24 22922 23314 - FlhE
TC HRGMv2_4162_42 HRGMv2_4162_42_25 23314 25392 - 3.A.6.2.1
TC HRGMv2_4162_42 HRGMv2_4162_42_26 25385 26533 - 3.A.6.2.1
pfam HRGMv2_4162_42 HRGMv2_4162_42_27 27036 27611 + Fimbrial
pfam HRGMv2_4162_42 HRGMv2_4162_42_28 27752 28444 + PapD_N | PapD_C
TC HRGMv2_4162_42 HRGMv2_4162_42_29 28475 30997 + 1.B.11.3.6
Gene ID: HRGMv2_4162_42_19
Type: TC
Location: 16536 - 17279 (-)
Gene ID: HRGMv2_4162_42_20
Type: pfam
Location: 17356 - 17916 (-)
Gene ID: HRGMv2_4162_42_21
Type: pfam
Location: 18155 - 19888 (+)
Gene ID: HRGMv2_4162_42_22
Type: CAZyme
Location: 19933 - 21072 (-)
Gene ID: HRGMv2_4162_42_23
Type: TC
Location: 21077 - 22660 (-)
Gene ID: HRGMv2_4162_42_24
Type: pfam
Location: 22922 - 23314 (-)
Gene ID: HRGMv2_4162_42_25
Type: TC
Location: 23314 - 25392 (-)
Gene ID: HRGMv2_4162_42_26
Type: TC
Location: 25385 - 26533 (-)
Gene ID: HRGMv2_4162_42_27
Type: pfam
Location: 27036 - 27611 (+)
Gene ID: HRGMv2_4162_42_28
Type: pfam
Location: 27752 - 28444 (+)
Gene ID: HRGMv2_4162_42_29
Type: TC
Location: 28475 - 30997 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4162_42_23 vegetarian > omnivore 1.54548 0.04735

🧭 Explore Read Mapping of CGC

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