Cluster: HRGMv2_4162_CGC47
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4162
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4162_34 | HRGMv2_4162_34_25 | 24270 | 25490 | - | GT4 |
| pfam | HRGMv2_4162_34 | HRGMv2_4162_34_26 | 25487 | 26767 | - | PS_pyruv_trans |
| TC | HRGMv2_4162_34 | HRGMv2_4162_34_27 | 26854 | 28332 | - | 2.A.66.2.7 |
| TC | HRGMv2_4162_34 | HRGMv2_4162_34_28 | 28342 | 29736 | - | 9.B.18.1.1 |
| pfam | HRGMv2_4162_34 | HRGMv2_4162_34_29 | 29870 | 31240 | - | PGM_PMM_IV | PGM_PMM_I | PGM_PMM_II | PGM_PMM_III |
| pfam | HRGMv2_4162_34 | HRGMv2_4162_34_30 | 31348 | 32784 | - | NTP_transferase | MannoseP_isomer | Cupin_2 | NTP_transf_3 | ManC_GMP_beta-helix |
| CAZyme | HRGMv2_4162_34 | HRGMv2_4162_34_31 | 32787 | 34010 | - | GT4 |
Gene ID: HRGMv2_4162_34_25
Type: CAZyme
Location: 24270 - 25490 (-)
Type: CAZyme
Location: 24270 - 25490 (-)
Gene ID: HRGMv2_4162_34_26
Type: pfam
Location: 25487 - 26767 (-)
Type: pfam
Location: 25487 - 26767 (-)
Gene ID: HRGMv2_4162_34_27
Type: TC
Location: 26854 - 28332 (-)
Type: TC
Location: 26854 - 28332 (-)
Gene ID: HRGMv2_4162_34_28
Type: TC
Location: 28342 - 29736 (-)
Type: TC
Location: 28342 - 29736 (-)
Gene ID: HRGMv2_4162_34_29
Type: pfam
Location: 29870 - 31240 (-)
Type: pfam
Location: 29870 - 31240 (-)
Gene ID: HRGMv2_4162_34_30
Type: pfam
Location: 31348 - 32784 (-)
Type: pfam
Location: 31348 - 32784 (-)
Gene ID: HRGMv2_4162_34_31
Type: CAZyme
Location: 32787 - 34010 (-)
Type: CAZyme
Location: 32787 - 34010 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Lelliottia
Species
Lelliottia chinensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.