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Cluster: HRGMv2_4162_CGC45

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4162_33 HRGMv2_4162_33_1 2 2188 + 3.A.23.1.1
CAZyme HRGMv2_4162_33 HRGMv2_4162_33_2 2198 4960 + GH24
NULL(UNKNOWN) HRGMv2_4162_33 HRGMv2_4162_33_3 4947 5837 + NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_4162_33 HRGMv2_4162_33_4 6691 7410 + GntR
TC HRGMv2_4162_33 HRGMv2_4162_33_5 7407 8420 + 3.A.1.5.2
TC HRGMv2_4162_33 HRGMv2_4162_33_6 8417 9499 + 3.A.1.5.20
TC HRGMv2_4162_33 HRGMv2_4162_33_7 9502 11016 + 3.A.1.5.20
TC HRGMv2_4162_33 HRGMv2_4162_33_8 11038 11979 + 3.A.1.5.11
TC HRGMv2_4162_33 HRGMv2_4162_33_9 11982 12857 + 3.A.1.5.39
Gene ID: HRGMv2_4162_33_1
Type: TC
Location: 2 - 2188 (+)
Gene ID: HRGMv2_4162_33_2
Type: CAZyme
Location: 2198 - 4960 (+)
Gene ID: HRGMv2_4162_33_3
Type:
Location: 4947 - 5837 (+)
Gene ID: HRGMv2_4162_33_4
Type: TF
Location: 6691 - 7410 (+)
Gene ID: HRGMv2_4162_33_5
Type: TC
Location: 7407 - 8420 (+)
Gene ID: HRGMv2_4162_33_6
Type: TC
Location: 8417 - 9499 (+)
Gene ID: HRGMv2_4162_33_7
Type: TC
Location: 9502 - 11016 (+)
Gene ID: HRGMv2_4162_33_8
Type: TC
Location: 11038 - 11979 (+)
Gene ID: HRGMv2_4162_33_9
Type: TC
Location: 11982 - 12857 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4162_33_5 vegetarian > omnivore 3.22443 0.00079
HRGMv2_4162_33_5 vegetarian > vegan 1.59878 0.01976

🧭 Explore Read Mapping of CGC

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