Cluster: HRGMv2_4162_CGC34
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_4162
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4162_21 | HRGMv2_4162_21_14 | 12445 | 13785 | + | 2.A.8.1.8 |
| NULL(UNKNOWN) | HRGMv2_4162_21 | HRGMv2_4162_21_15 | 13991 | 14437 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4162_21 | HRGMv2_4162_21_16 | 14823 | 15416 | - | 2.A.95.1.5 |
| pfam | HRGMv2_4162_21 | HRGMv2_4162_21_17 | 15595 | 16698 | + | Semialdhyde_dh | Semialdhyde_dhC |
| CAZyme | HRGMv2_4162_21 | HRGMv2_4162_21_18 | 16948 | 19137 | + | CBM48 | GH13_9 |
| CAZyme | HRGMv2_4162_21 | HRGMv2_4162_21_19 | 19134 | 21128 | + | GH13_11 |
| pfam | HRGMv2_4162_21 | HRGMv2_4162_21_20 | 21121 | 22416 | + | NTP_transferase | NTP_transf_3 | Hexapep_GlmU |
| CAZyme | HRGMv2_4162_21 | HRGMv2_4162_21_21 | 22416 | 23849 | + | GT5 |
| CAZyme | HRGMv2_4162_21 | HRGMv2_4162_21_22 | 23869 | 26316 | + | GT35 |
| pfam | HRGMv2_4162_21 | HRGMv2_4162_21_23 | 26512 | 28020 | - | DAO | DAO_C |
| STP | HRGMv2_4162_21 | HRGMv2_4162_21_24 | 28844 | 29176 | + | Rhodanese |
| TC | HRGMv2_4162_21 | HRGMv2_4162_21_25 | 29224 | 30054 | + | 9.B.104.1.1 |
| TF | HRGMv2_4162_21 | HRGMv2_4162_21_26 | 30071 | 30829 | + | HTH_DeoR |
| TF | HRGMv2_4162_21 | HRGMv2_4162_21_27 | 30871 | 33576 | - | GerE |
| CAZyme | HRGMv2_4162_21 | HRGMv2_4162_21_28 | 34161 | 36554 | + | GT35 |
| CAZyme | HRGMv2_4162_21 | HRGMv2_4162_21_29 | 36564 | 38651 | + | GH77 |
| TC | HRGMv2_4162_21 | HRGMv2_4162_21_30 | 38721 | 40037 | - | 2.A.8.1.4 |
Gene ID: HRGMv2_4162_21_14
Type: TC
Location: 12445 - 13785 (+)
Type: TC
Location: 12445 - 13785 (+)
Gene ID: HRGMv2_4162_21_15
Type:
Location: 13991 - 14437 (-)
Type:
Location: 13991 - 14437 (-)
Gene ID: HRGMv2_4162_21_16
Type: TC
Location: 14823 - 15416 (-)
Type: TC
Location: 14823 - 15416 (-)
Gene ID: HRGMv2_4162_21_17
Type: pfam
Location: 15595 - 16698 (+)
Type: pfam
Location: 15595 - 16698 (+)
Gene ID: HRGMv2_4162_21_18
Type: CAZyme
Location: 16948 - 19137 (+)
Type: CAZyme
Location: 16948 - 19137 (+)
Gene ID: HRGMv2_4162_21_19
Type: CAZyme
Location: 19134 - 21128 (+)
Type: CAZyme
Location: 19134 - 21128 (+)
Gene ID: HRGMv2_4162_21_20
Type: pfam
Location: 21121 - 22416 (+)
Type: pfam
Location: 21121 - 22416 (+)
Gene ID: HRGMv2_4162_21_21
Type: CAZyme
Location: 22416 - 23849 (+)
Type: CAZyme
Location: 22416 - 23849 (+)
Gene ID: HRGMv2_4162_21_22
Type: CAZyme
Location: 23869 - 26316 (+)
Type: CAZyme
Location: 23869 - 26316 (+)
Gene ID: HRGMv2_4162_21_23
Type: pfam
Location: 26512 - 28020 (-)
Type: pfam
Location: 26512 - 28020 (-)
Gene ID: HRGMv2_4162_21_24
Type: STP
Location: 28844 - 29176 (+)
Type: STP
Location: 28844 - 29176 (+)
Gene ID: HRGMv2_4162_21_25
Type: TC
Location: 29224 - 30054 (+)
Type: TC
Location: 29224 - 30054 (+)
Gene ID: HRGMv2_4162_21_26
Type: TF
Location: 30071 - 30829 (+)
Type: TF
Location: 30071 - 30829 (+)
Gene ID: HRGMv2_4162_21_27
Type: TF
Location: 30871 - 33576 (-)
Type: TF
Location: 30871 - 33576 (-)
Gene ID: HRGMv2_4162_21_28
Type: CAZyme
Location: 34161 - 36554 (+)
Type: CAZyme
Location: 34161 - 36554 (+)
Gene ID: HRGMv2_4162_21_29
Type: CAZyme
Location: 36564 - 38651 (+)
Type: CAZyme
Location: 36564 - 38651 (+)
Gene ID: HRGMv2_4162_21_30
Type: TC
Location: 38721 - 40037 (-)
Type: TC
Location: 38721 - 40037 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Lelliottia
Species
Lelliottia chinensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.