Cluster: HRGMv2_4162_CGC33
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4162
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4162_20 | HRGMv2_4162_20_46 | 48428 | 49861 | - | GH1 |
| TF | HRGMv2_4162_20 | HRGMv2_4162_20_47 | 49978 | 50709 | - | HTH_6 |
| pfam | HRGMv2_4162_20 | HRGMv2_4162_20_48 | 50761 | 51072 | + | ASCH |
| TC | HRGMv2_4162_20 | HRGMv2_4162_20_49 | 51236 | 51895 | + | 1.C.113.1.10 |
Gene ID: HRGMv2_4162_20_46
Type: CAZyme
Location: 48428 - 49861 (-)
Type: CAZyme
Location: 48428 - 49861 (-)
Gene ID: HRGMv2_4162_20_47
Type: TF
Location: 49978 - 50709 (-)
Type: TF
Location: 49978 - 50709 (-)
Gene ID: HRGMv2_4162_20_48
Type: pfam
Location: 50761 - 51072 (+)
Type: pfam
Location: 50761 - 51072 (+)
Gene ID: HRGMv2_4162_20_49
Type: TC
Location: 51236 - 51895 (+)
Type: TC
Location: 51236 - 51895 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Lelliottia
Species
Lelliottia chinensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4162_20_46 | vegan > omnivore | 1.56353 | 0.00667 |
| HRGMv2_4162_20_47 | vegetarian > vegan | 1.08132 | 0.01976 |
| HRGMv2_4162_20_49 | vegan > omnivore | 1.39770 | 0.03282 |