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Cluster: HRGMv2_4162_CGC30

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4162_18 HRGMv2_4162_18_34 30131 30739 + 3.D.1.9.2
TC HRGMv2_4162_18 HRGMv2_4162_18_35 30736 32562 + 3.D.1.9.2
TC HRGMv2_4162_18 HRGMv2_4162_18_36 32564 33487 + 3.D.1.9.2
TC HRGMv2_4162_18 HRGMv2_4162_18_37 33503 35212 + 3.D.1.9.2
TC HRGMv2_4162_18 HRGMv2_4162_18_38 35448 35990 + 3.D.1.9.2
TC HRGMv2_4162_18 HRGMv2_4162_18_39 35990 36757 + 3.D.1.9.2
pfam HRGMv2_4162_18 HRGMv2_4162_18_40 36754 37164 + HycH
peptidase HRGMv2_4162_18 HRGMv2_4162_18_41 37157 37612 + A31.003
CAZyme HRGMv2_4162_18 HRGMv2_4162_18_42 37701 39125 - GH1
TC HRGMv2_4162_18 HRGMv2_4162_18_43 39144 40595 - 4.A.1.2.3
TF HRGMv2_4162_18 HRGMv2_4162_18_44 40811 41824 + LacI
TC HRGMv2_4162_18 HRGMv2_4162_18_45 41956 42501 + 5.A.3.11.1
pfam HRGMv2_4162_18 HRGMv2_4162_18_46 42504 44735 + Acylphosphatase | Sua5_yciO_yrdC | zf-HYPF | zf-HYPF | HypF_C | HypF_C_2
TC HRGMv2_4162_18 HRGMv2_4162_18_47 44737 45762 + 2.A.52.1.1
Gene ID: HRGMv2_4162_18_34
Type: TC
Location: 30131 - 30739 (+)
Gene ID: HRGMv2_4162_18_35
Type: TC
Location: 30736 - 32562 (+)
Gene ID: HRGMv2_4162_18_36
Type: TC
Location: 32564 - 33487 (+)
Gene ID: HRGMv2_4162_18_37
Type: TC
Location: 33503 - 35212 (+)
Gene ID: HRGMv2_4162_18_38
Type: TC
Location: 35448 - 35990 (+)
Gene ID: HRGMv2_4162_18_39
Type: TC
Location: 35990 - 36757 (+)
Gene ID: HRGMv2_4162_18_40
Type: pfam
Location: 36754 - 37164 (+)
Gene ID: HRGMv2_4162_18_41
Type: peptidase
Location: 37157 - 37612 (+)
Gene ID: HRGMv2_4162_18_42
Type: CAZyme
Location: 37701 - 39125 (-)
Gene ID: HRGMv2_4162_18_43
Type: TC
Location: 39144 - 40595 (-)
Gene ID: HRGMv2_4162_18_44
Type: TF
Location: 40811 - 41824 (+)
Gene ID: HRGMv2_4162_18_45
Type: TC
Location: 41956 - 42501 (+)
Gene ID: HRGMv2_4162_18_46
Type: pfam
Location: 42504 - 44735 (+)
Gene ID: HRGMv2_4162_18_47
Type: TC
Location: 44737 - 45762 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4162_18_42 vegan > omnivore 1.13132 0.04154
HRGMv2_4162_18_45 vegetarian > vegan 1.27810 0.01976

🧭 Explore Read Mapping of CGC

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