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Cluster: HRGMv2_4162_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4162_1 HRGMv2_4162_1_199 192927 193781 - 8.A.5.1.4
TC HRGMv2_4162_1 HRGMv2_4162_1_200 193870 194616 - 9.B.99.1.2
pfam HRGMv2_4162_1 HRGMv2_4162_1_201 195054 196988 + PrkA | AAA_PrkA
pfam HRGMv2_4162_1 HRGMv2_4162_1_202 197100 198383 + DUF444
TC HRGMv2_4162_1 HRGMv2_4162_1_203 198415 199311 - 9.B.34.1.1
pfam HRGMv2_4162_1 HRGMv2_4162_1_204 199475 199975 + tRNA_edit
TC HRGMv2_4162_1 HRGMv2_4162_1_205 199994 202018 - 1.B.14.4.1
NULL(UNKNOWN) HRGMv2_4162_1 HRGMv2_4162_1_206 202230 202334 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4162_1 HRGMv2_4162_1_207 202620 203954 + 2.A.2.3.4
CAZyme HRGMv2_4162_1 HRGMv2_4162_1_208 203969 206005 + GH31_4
pfam HRGMv2_4162_1 HRGMv2_4162_1_209 206114 206560 + DUF441
TF HRGMv2_4162_1 HRGMv2_4162_1_210 206544 207335 - 0035607 | 0035607
TC HRGMv2_4162_1 HRGMv2_4162_1_211 207436 208623 + 2.A.1.17.3
Gene ID: HRGMv2_4162_1_199
Type: TC
Location: 192927 - 193781 (-)
Gene ID: HRGMv2_4162_1_200
Type: TC
Location: 193870 - 194616 (-)
Gene ID: HRGMv2_4162_1_201
Type: pfam
Location: 195054 - 196988 (+)
Gene ID: HRGMv2_4162_1_202
Type: pfam
Location: 197100 - 198383 (+)
Gene ID: HRGMv2_4162_1_203
Type: TC
Location: 198415 - 199311 (-)
Gene ID: HRGMv2_4162_1_204
Type: pfam
Location: 199475 - 199975 (+)
Gene ID: HRGMv2_4162_1_205
Type: TC
Location: 199994 - 202018 (-)
Gene ID: HRGMv2_4162_1_206
Type:
Location: 202230 - 202334 (-)
Gene ID: HRGMv2_4162_1_207
Type: TC
Location: 202620 - 203954 (+)
Gene ID: HRGMv2_4162_1_208
Type: CAZyme
Location: 203969 - 206005 (+)
Gene ID: HRGMv2_4162_1_209
Type: pfam
Location: 206114 - 206560 (+)
Gene ID: HRGMv2_4162_1_210
Type: TF
Location: 206544 - 207335 (-)
Gene ID: HRGMv2_4162_1_211
Type: TC
Location: 207436 - 208623 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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