Cluster: HRGMv2_4162_CGC28
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4162
- CGC Family ID: CGCFAM_00788
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4162_16 | HRGMv2_4162_16_13 | 13642 | 15480 | - | CBM73 | GH19 |
| CAZyme | HRGMv2_4162_16 | HRGMv2_4162_16_14 | 15614 | 16066 | - | GH23 |
| CAZyme | HRGMv2_4162_16 | HRGMv2_4162_16_15 | 16195 | 18918 | - | GH18 |
| TC | HRGMv2_4162_16 | HRGMv2_4162_16_16 | 19173 | 19970 | - | 3.A.15.2.1 |
| pfam | HRGMv2_4162_16 | HRGMv2_4162_16_17 | 19967 | 20452 | - | T2SSM |
| pfam | HRGMv2_4162_16 | HRGMv2_4162_16_18 | 20449 | 21594 | - | T2SSL | GspL_C |
| TC | HRGMv2_4162_16 | HRGMv2_4162_16_19 | 21610 | 22620 | - | 3.A.15.1.1 |
| TC | HRGMv2_4162_16 | HRGMv2_4162_16_20 | 22617 | 23294 | - | 3.A.15.3.1 |
| pfam | HRGMv2_4162_16 | HRGMv2_4162_16_21 | 23291 | 23671 | - | T2SSI | N_methyl |
| TC | HRGMv2_4162_16 | HRGMv2_4162_16_22 | 23664 | 24149 | - | 3.A.15.1.1 |
| TC | HRGMv2_4162_16 | HRGMv2_4162_16_23 | 24149 | 24598 | - | 3.A.15.1.1 |
| TC | HRGMv2_4162_16 | HRGMv2_4162_16_24 | 24600 | 25808 | - | 3.A.15.1.1 |
| TC | HRGMv2_4162_16 | HRGMv2_4162_16_25 | 25808 | 27286 | - | 3.A.15.1.1 |
| TC | HRGMv2_4162_16 | HRGMv2_4162_16_26 | 27301 | 29226 | - | 1.B.22.1.1 |
Gene ID: HRGMv2_4162_16_13
Type: CAZyme
Location: 13642 - 15480 (-)
Type: CAZyme
Location: 13642 - 15480 (-)
Gene ID: HRGMv2_4162_16_14
Type: CAZyme
Location: 15614 - 16066 (-)
Type: CAZyme
Location: 15614 - 16066 (-)
Gene ID: HRGMv2_4162_16_15
Type: CAZyme
Location: 16195 - 18918 (-)
Type: CAZyme
Location: 16195 - 18918 (-)
Gene ID: HRGMv2_4162_16_16
Type: TC
Location: 19173 - 19970 (-)
Type: TC
Location: 19173 - 19970 (-)
Gene ID: HRGMv2_4162_16_17
Type: pfam
Location: 19967 - 20452 (-)
Type: pfam
Location: 19967 - 20452 (-)
Gene ID: HRGMv2_4162_16_18
Type: pfam
Location: 20449 - 21594 (-)
Type: pfam
Location: 20449 - 21594 (-)
Gene ID: HRGMv2_4162_16_19
Type: TC
Location: 21610 - 22620 (-)
Type: TC
Location: 21610 - 22620 (-)
Gene ID: HRGMv2_4162_16_20
Type: TC
Location: 22617 - 23294 (-)
Type: TC
Location: 22617 - 23294 (-)
Gene ID: HRGMv2_4162_16_21
Type: pfam
Location: 23291 - 23671 (-)
Type: pfam
Location: 23291 - 23671 (-)
Gene ID: HRGMv2_4162_16_22
Type: TC
Location: 23664 - 24149 (-)
Type: TC
Location: 23664 - 24149 (-)
Gene ID: HRGMv2_4162_16_23
Type: TC
Location: 24149 - 24598 (-)
Type: TC
Location: 24149 - 24598 (-)
Gene ID: HRGMv2_4162_16_24
Type: TC
Location: 24600 - 25808 (-)
Type: TC
Location: 24600 - 25808 (-)
Gene ID: HRGMv2_4162_16_25
Type: TC
Location: 25808 - 27286 (-)
Type: TC
Location: 25808 - 27286 (-)
Gene ID: HRGMv2_4162_16_26
Type: TC
Location: 27301 - 29226 (-)
Type: TC
Location: 27301 - 29226 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Lelliottia
Species
Lelliottia chinensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4162_16_21 | vegetarian > omnivore | 2.06871 | 0.04753 |
| HRGMv2_4162_16_22 | vegetarian > vegan | 1.53737 | 0.01976 |
| HRGMv2_4162_16_25 | vegetarian > vegan | 1.64247 | 0.01976 |