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Cluster: HRGMv2_4162_CGC25

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4162_14 HRGMv2_4162_14_1 305 1900 - 3.A.1.121.4
peptidase HRGMv2_4162_14 HRGMv2_4162_14_2 2123 3043 + C82.UPB
TF HRGMv2_4162_14 HRGMv2_4162_14_3 3092 3808 - GntR
TC HRGMv2_4162_14 HRGMv2_4162_14_4 3825 5147 - 4.A.3.2.9
CAZyme HRGMv2_4162_14 HRGMv2_4162_14_5 5198 6574 - GH1
TC HRGMv2_4162_14 HRGMv2_4162_14_6 6739 7773 - 8.A.5.1.3
TC HRGMv2_4162_14 HRGMv2_4162_14_7 7880 9403 - 1.B.17.3.8
TC HRGMv2_4162_14 HRGMv2_4162_14_8 9403 10974 - 2.A.1.3.2
TC HRGMv2_4162_14 HRGMv2_4162_14_9 10971 12068 - 8.A.1.1.2
TC HRGMv2_4162_14 HRGMv2_4162_14_10 12169 13278 - 2.A.45.2.5
Gene ID: HRGMv2_4162_14_1
Type: TC
Location: 305 - 1900 (-)
Gene ID: HRGMv2_4162_14_2
Type: peptidase
Location: 2123 - 3043 (+)
Gene ID: HRGMv2_4162_14_3
Type: TF
Location: 3092 - 3808 (-)
Gene ID: HRGMv2_4162_14_4
Type: TC
Location: 3825 - 5147 (-)
Gene ID: HRGMv2_4162_14_5
Type: CAZyme
Location: 5198 - 6574 (-)
Gene ID: HRGMv2_4162_14_6
Type: TC
Location: 6739 - 7773 (-)
Gene ID: HRGMv2_4162_14_7
Type: TC
Location: 7880 - 9403 (-)
Gene ID: HRGMv2_4162_14_8
Type: TC
Location: 9403 - 10974 (-)
Gene ID: HRGMv2_4162_14_9
Type: TC
Location: 10971 - 12068 (-)
Gene ID: HRGMv2_4162_14_10
Type: TC
Location: 12169 - 13278 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4162_14_4 vegetarian > vegan 1.43922 0.01976
HRGMv2_4162_14_6 vegetarian > omnivore 2.44496 0.04753
HRGMv2_4162_14_6 vegetarian > vegan 1.93676 0.01976
HRGMv2_4162_14_8 vegetarian > vegan 1.74057 0.01976

🧭 Explore Read Mapping of CGC

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