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Cluster: HRGMv2_4162_CGC24

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4162_12 HRGMv2_4162_12_26 26923 29445 + GT51
pfam HRGMv2_4162_12 HRGMv2_4162_12_27 29796 30368 + Fimbrial
pfam HRGMv2_4162_12 HRGMv2_4162_12_28 30416 31129 + PapD_N | PapD_C
TC HRGMv2_4162_12 HRGMv2_4162_12_29 31146 33623 + 1.B.11.3.6
pfam HRGMv2_4162_12 HRGMv2_4162_12_30 33638 34639 + Fimbrial
TC HRGMv2_4162_12 HRGMv2_4162_12_31 34832 37081 + 1.B.14.1.2
TC HRGMv2_4162_12 HRGMv2_4162_12_32 37130 37927 + 3.A.1.14.3
TC HRGMv2_4162_12 HRGMv2_4162_12_33 37927 38817 + 3.A.1.14.3
TC HRGMv2_4162_12 HRGMv2_4162_12_34 38814 40796 + 3.A.1.14.3
pfam HRGMv2_4162_12 HRGMv2_4162_12_35 41123 42403 - Aminotran_3
TC HRGMv2_4162_12 HRGMv2_4162_12_36 42581 43957 + 2.A.49.5.5
pfam HRGMv2_4162_12 HRGMv2_4162_12_37 44037 44381 + Fe-S_biosyn
TC HRGMv2_4162_12 HRGMv2_4162_12_38 44464 45090 - 1.A.62.2.2
TC HRGMv2_4162_12 HRGMv2_4162_12_39 45109 45909 - 3.A.1.13.1
Gene ID: HRGMv2_4162_12_26
Type: CAZyme
Location: 26923 - 29445 (+)
Gene ID: HRGMv2_4162_12_27
Type: pfam
Location: 29796 - 30368 (+)
Gene ID: HRGMv2_4162_12_28
Type: pfam
Location: 30416 - 31129 (+)
Gene ID: HRGMv2_4162_12_29
Type: TC
Location: 31146 - 33623 (+)
Gene ID: HRGMv2_4162_12_30
Type: pfam
Location: 33638 - 34639 (+)
Gene ID: HRGMv2_4162_12_31
Type: TC
Location: 34832 - 37081 (+)
Gene ID: HRGMv2_4162_12_32
Type: TC
Location: 37130 - 37927 (+)
Gene ID: HRGMv2_4162_12_33
Type: TC
Location: 37927 - 38817 (+)
Gene ID: HRGMv2_4162_12_34
Type: TC
Location: 38814 - 40796 (+)
Gene ID: HRGMv2_4162_12_35
Type: pfam
Location: 41123 - 42403 (-)
Gene ID: HRGMv2_4162_12_36
Type: TC
Location: 42581 - 43957 (+)
Gene ID: HRGMv2_4162_12_37
Type: pfam
Location: 44037 - 44381 (+)
Gene ID: HRGMv2_4162_12_38
Type: TC
Location: 44464 - 45090 (-)
Gene ID: HRGMv2_4162_12_39
Type: TC
Location: 45109 - 45909 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4162_12_36 vegetarian > vegan 1.89385 0.01976

🧭 Explore Read Mapping of CGC

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