Cluster: HRGMv2_4162_CGC22
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4162
- CGC Family ID: CGCFAM_01172
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4162_11 | HRGMv2_4162_11_39 | 41966 | 43411 | - | 4.A.2.1.25 |
| TC | HRGMv2_4162_11 | HRGMv2_4162_11_40 | 43422 | 43868 | - | 4.A.2.1.25 |
| pfam | HRGMv2_4162_11 | HRGMv2_4162_11_41 | 44054 | 44377 | - | AzlD |
| TC | HRGMv2_4162_11 | HRGMv2_4162_11_42 | 44377 | 45036 | - | 2.A.78.2.3 |
| TF | HRGMv2_4162_11 | HRGMv2_4162_11_43 | 45138 | 45686 | + | HTH_3 |
| TF | HRGMv2_4162_11 | HRGMv2_4162_11_44 | 45704 | 46699 | + | LacI |
| CAZyme | HRGMv2_4162_11 | HRGMv2_4162_11_45 | 46803 | 48926 | + | GH36 |
| TC | HRGMv2_4162_11 | HRGMv2_4162_11_46 | 48970 | 50235 | + | 2.A.1.5.4 |
| pfam | HRGMv2_4162_11 | HRGMv2_4162_11_47 | 50274 | 50588 | - | rhaM |
| pfam | HRGMv2_4162_11 | HRGMv2_4162_11_48 | 50585 | 51733 | - | Fe-ADH | Fe-ADH_2 | ADH_Fe_C |
| TC | HRGMv2_4162_11 | HRGMv2_4162_11_49 | 51864 | 52856 | - | 3.A.1.2.8 |
| TC | HRGMv2_4162_11 | HRGMv2_4162_11_50 | 52865 | 53869 | - | 3.A.1.2.9 |
| TC | HRGMv2_4162_11 | HRGMv2_4162_11_51 | 53869 | 55371 | - | 3.A.1.2.9 |
| TC | HRGMv2_4162_11 | HRGMv2_4162_11_52 | 55480 | 56466 | - | 3.A.1.2.9 |
Gene ID: HRGMv2_4162_11_39
Type: TC
Location: 41966 - 43411 (-)
Type: TC
Location: 41966 - 43411 (-)
Gene ID: HRGMv2_4162_11_40
Type: TC
Location: 43422 - 43868 (-)
Type: TC
Location: 43422 - 43868 (-)
Gene ID: HRGMv2_4162_11_41
Type: pfam
Location: 44054 - 44377 (-)
Type: pfam
Location: 44054 - 44377 (-)
Gene ID: HRGMv2_4162_11_42
Type: TC
Location: 44377 - 45036 (-)
Type: TC
Location: 44377 - 45036 (-)
Gene ID: HRGMv2_4162_11_43
Type: TF
Location: 45138 - 45686 (+)
Type: TF
Location: 45138 - 45686 (+)
Gene ID: HRGMv2_4162_11_44
Type: TF
Location: 45704 - 46699 (+)
Type: TF
Location: 45704 - 46699 (+)
Gene ID: HRGMv2_4162_11_45
Type: CAZyme
Location: 46803 - 48926 (+)
Type: CAZyme
Location: 46803 - 48926 (+)
Gene ID: HRGMv2_4162_11_46
Type: TC
Location: 48970 - 50235 (+)
Type: TC
Location: 48970 - 50235 (+)
Gene ID: HRGMv2_4162_11_47
Type: pfam
Location: 50274 - 50588 (-)
Type: pfam
Location: 50274 - 50588 (-)
Gene ID: HRGMv2_4162_11_48
Type: pfam
Location: 50585 - 51733 (-)
Type: pfam
Location: 50585 - 51733 (-)
Gene ID: HRGMv2_4162_11_49
Type: TC
Location: 51864 - 52856 (-)
Type: TC
Location: 51864 - 52856 (-)
Gene ID: HRGMv2_4162_11_50
Type: TC
Location: 52865 - 53869 (-)
Type: TC
Location: 52865 - 53869 (-)
Gene ID: HRGMv2_4162_11_51
Type: TC
Location: 53869 - 55371 (-)
Type: TC
Location: 53869 - 55371 (-)
Gene ID: HRGMv2_4162_11_52
Type: TC
Location: 55480 - 56466 (-)
Type: TC
Location: 55480 - 56466 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Lelliottia
Species
Lelliottia chinensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4162_11_43 | vegetarian > omnivore | 1.24959 | 0.04753 |
| HRGMv2_4162_11_43 | vegetarian > vegan | 1.29329 | 0.01976 |
| HRGMv2_4162_11_44 | vegetarian > vegan | 1.37862 | 0.01976 |
| HRGMv2_4162_11_45 | vegetarian > omnivore | 1.89689 | 0.04753 |
| HRGMv2_4162_11_46 | vegetarian > omnivore | 2.07171 | 0.04753 |
| HRGMv2_4162_11_46 | vegetarian > vegan | 2.34645 | 0.01976 |
| HRGMv2_4162_11_51 | vegetarian > omnivore | 1.71860 | 0.04735 |
| HRGMv2_4162_11_51 | vegetarian > vegan | 1.83445 | 0.01788 |