Cluster: HRGMv2_4162_CGC17
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4162
- CGC Family ID: CGCFAM_10548
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4162_7 | HRGMv2_4162_7_78 | 91498 | 93450 | + | 4.A.2.1.3 |
| CAZyme | HRGMv2_4162_7 | HRGMv2_4162_7_79 | 93463 | 96093 | + | GH38 |
| NULL(UNKNOWN) | HRGMv2_4162_7 | HRGMv2_4162_7_80 | 96255 | 97997 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4162_7 | HRGMv2_4162_7_81 | 98000 | 98428 | + | 4.A.6.1.15 |
| TC | HRGMv2_4162_7 | HRGMv2_4162_7_82 | 98438 | 98932 | + | 4.A.6.1.2 |
| TC | HRGMv2_4162_7 | HRGMv2_4162_7_83 | 98943 | 99740 | + | 4.A.6.1.19 |
| TC | HRGMv2_4162_7 | HRGMv2_4162_7_84 | 99740 | 100558 | + | 4.A.6.1.17 |
Gene ID: HRGMv2_4162_7_78
Type: TC
Location: 91498 - 93450 (+)
Type: TC
Location: 91498 - 93450 (+)
Gene ID: HRGMv2_4162_7_79
Type: CAZyme
Location: 93463 - 96093 (+)
Type: CAZyme
Location: 93463 - 96093 (+)
Gene ID: HRGMv2_4162_7_80
Type:
Location: 96255 - 97997 (+)
Type:
Location: 96255 - 97997 (+)
Gene ID: HRGMv2_4162_7_81
Type: TC
Location: 98000 - 98428 (+)
Type: TC
Location: 98000 - 98428 (+)
Gene ID: HRGMv2_4162_7_82
Type: TC
Location: 98438 - 98932 (+)
Type: TC
Location: 98438 - 98932 (+)
Gene ID: HRGMv2_4162_7_83
Type: TC
Location: 98943 - 99740 (+)
Type: TC
Location: 98943 - 99740 (+)
Gene ID: HRGMv2_4162_7_84
Type: TC
Location: 99740 - 100558 (+)
Type: TC
Location: 99740 - 100558 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Lelliottia
Species
Lelliottia chinensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.