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Cluster: HRGMv2_4162_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4162_7 HRGMv2_4162_7_7 8855 10225 + 2.A.3.1.3
TC HRGMv2_4162_7 HRGMv2_4162_7_8 10387 11784 + 2.A.2.3.4
CAZyme HRGMv2_4162_7 HRGMv2_4162_7_9 11795 12745 + GH43_26
TC HRGMv2_4162_7 HRGMv2_4162_7_10 12764 13618 - 9.B.125.1.1
pfam HRGMv2_4162_7 HRGMv2_4162_7_11 13615 14178 - Amidase_2
pfam HRGMv2_4162_7 HRGMv2_4162_7_12 14266 15159 + QRPTase_C | QRPTase_N
TC HRGMv2_4162_7 HRGMv2_4162_7_13 15322 15774 + 3.A.15.2.1
TC HRGMv2_4162_7 HRGMv2_4162_7_14 15771 17156 + 3.A.15.2.1
TC HRGMv2_4162_7 HRGMv2_4162_7_15 17146 18342 + 3.A.15.2.1
Gene ID: HRGMv2_4162_7_7
Type: TC
Location: 8855 - 10225 (+)
Gene ID: HRGMv2_4162_7_8
Type: TC
Location: 10387 - 11784 (+)
Gene ID: HRGMv2_4162_7_9
Type: CAZyme
Location: 11795 - 12745 (+)
Gene ID: HRGMv2_4162_7_10
Type: TC
Location: 12764 - 13618 (-)
Gene ID: HRGMv2_4162_7_11
Type: pfam
Location: 13615 - 14178 (-)
Gene ID: HRGMv2_4162_7_12
Type: pfam
Location: 14266 - 15159 (+)
Gene ID: HRGMv2_4162_7_13
Type: TC
Location: 15322 - 15774 (+)
Gene ID: HRGMv2_4162_7_14
Type: TC
Location: 15771 - 17156 (+)
Gene ID: HRGMv2_4162_7_15
Type: TC
Location: 17146 - 18342 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4162_7_9 vegan > omnivore 2.34772 0.01475

🧭 Explore Read Mapping of CGC

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