dbCAN Logo

Cluster: HRGMv2_4162_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4162_5 HRGMv2_4162_5_12 11244 13430 + 1.B.14.1.15
TC HRGMv2_4162_5 HRGMv2_4162_5_13 13543 14937 + 2.A.3.1.1
TF HRGMv2_4162_5 HRGMv2_4162_5_14 14980 15279 - HTH_3
pfam HRGMv2_4162_5 HRGMv2_4162_5_15 15343 15558 - Gp49
TC HRGMv2_4162_5 HRGMv2_4162_5_16 15836 17074 + 2.A.1.10.4
pfam HRGMv2_4162_5 HRGMv2_4162_5_17 17090 18115 + AP_endonuc_2
CAZyme HRGMv2_4162_5 HRGMv2_4162_5_18 18108 19250 + GH109
TF HRGMv2_4162_5 HRGMv2_4162_5_19 19326 20297 + LacI
TC HRGMv2_4162_5 HRGMv2_4162_5_20 20301 21545 - 1.A.23.4.5
TC HRGMv2_4162_5 HRGMv2_4162_5_21 21611 23047 - 2.A.1.3.38
pfam HRGMv2_4162_5 HRGMv2_4162_5_22 23155 24024 + HTH_31 | MLTR_LBD
TC HRGMv2_4162_5 HRGMv2_4162_5_23 24021 25055 + 9.B.8.3.4
Gene ID: HRGMv2_4162_5_12
Type: TC
Location: 11244 - 13430 (+)
Gene ID: HRGMv2_4162_5_13
Type: TC
Location: 13543 - 14937 (+)
Gene ID: HRGMv2_4162_5_14
Type: TF
Location: 14980 - 15279 (-)
Gene ID: HRGMv2_4162_5_15
Type: pfam
Location: 15343 - 15558 (-)
Gene ID: HRGMv2_4162_5_16
Type: TC
Location: 15836 - 17074 (+)
Gene ID: HRGMv2_4162_5_17
Type: pfam
Location: 17090 - 18115 (+)
Gene ID: HRGMv2_4162_5_18
Type: CAZyme
Location: 18108 - 19250 (+)
Gene ID: HRGMv2_4162_5_19
Type: TF
Location: 19326 - 20297 (+)
Gene ID: HRGMv2_4162_5_20
Type: TC
Location: 20301 - 21545 (-)
Gene ID: HRGMv2_4162_5_21
Type: TC
Location: 21611 - 23047 (-)
Gene ID: HRGMv2_4162_5_22
Type: pfam
Location: 23155 - 24024 (+)
Gene ID: HRGMv2_4162_5_23
Type: TC
Location: 24021 - 25055 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4162_5_20 vegan > omnivore 1.15198 0.04154

🧭 Explore Read Mapping of CGC

← Back to Cluster List