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Cluster: HRGMv2_4162_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4162_4 HRGMv2_4162_4_32 30627 32312 + GH13_18
TC HRGMv2_4162_4 HRGMv2_4162_4_33 32326 33618 + 3.A.1.1.46
TC HRGMv2_4162_4 HRGMv2_4162_4_34 33640 34521 + 3.A.1.1.46
TC HRGMv2_4162_4 HRGMv2_4162_4_35 34508 35350 + 3.A.1.1.46
pfam HRGMv2_4162_4 HRGMv2_4162_4_36 35379 36431 + ADH_zinc_N
pfam HRGMv2_4162_4 HRGMv2_4162_4_37 36450 37238 + AP_endonuc_2
CAZyme HRGMv2_4162_4 HRGMv2_4162_4_38 37238 38308 + GH179
CAZyme HRGMv2_4162_4 HRGMv2_4162_4_39 38302 40575 + GH65
pfam HRGMv2_4162_4 HRGMv2_4162_4_40 40572 41252 + Hydrolase | HAD_2
TC HRGMv2_4162_4 HRGMv2_4162_4_41 41263 42342 + 3.A.1.1.46
TC HRGMv2_4162_4 HRGMv2_4162_4_42 42406 43320 + 1.B.21.1.1
Gene ID: HRGMv2_4162_4_32
Type: CAZyme
Location: 30627 - 32312 (+)
Gene ID: HRGMv2_4162_4_33
Type: TC
Location: 32326 - 33618 (+)
Gene ID: HRGMv2_4162_4_34
Type: TC
Location: 33640 - 34521 (+)
Gene ID: HRGMv2_4162_4_35
Type: TC
Location: 34508 - 35350 (+)
Gene ID: HRGMv2_4162_4_36
Type: pfam
Location: 35379 - 36431 (+)
Gene ID: HRGMv2_4162_4_37
Type: pfam
Location: 36450 - 37238 (+)
Gene ID: HRGMv2_4162_4_38
Type: CAZyme
Location: 37238 - 38308 (+)
Gene ID: HRGMv2_4162_4_39
Type: CAZyme
Location: 38302 - 40575 (+)
Gene ID: HRGMv2_4162_4_40
Type: pfam
Location: 40572 - 41252 (+)
Gene ID: HRGMv2_4162_4_41
Type: TC
Location: 41263 - 42342 (+)
Gene ID: HRGMv2_4162_4_42
Type: TC
Location: 42406 - 43320 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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