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Cluster: HRGMv2_4162_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4162_1 HRGMv2_4162_1_75 68977 70092 + 2.A.86.2.1
CAZyme HRGMv2_4162_1 HRGMv2_4162_1_76 70403 72778 - GH3
TC HRGMv2_4162_1 HRGMv2_4162_1_77 72783 74183 - 2.A.2.3.5
TC HRGMv2_4162_1 HRGMv2_4162_1_78 74418 75491 - 3.A.1.1.49
TF HRGMv2_4162_1 HRGMv2_4162_1_79 75587 76648 - LacI
STP HRGMv2_4162_1 HRGMv2_4162_1_80 76829 78115 + SBP_bac_1
TC HRGMv2_4162_1 HRGMv2_4162_1_81 78125 78991 + 3.A.1.1.35
TC HRGMv2_4162_1 HRGMv2_4162_1_82 78992 79819 + 3.A.1.1.36
CAZyme HRGMv2_4162_1 HRGMv2_4162_1_83 79831 81411 + GH13_31
CAZyme HRGMv2_4162_1 HRGMv2_4162_1_84 81395 82456 + GH130_4
TC HRGMv2_4162_1 HRGMv2_4162_1_85 82507 84885 - 8.A.7.1.4
pfam HRGMv2_4162_1 HRGMv2_4162_1_86 85220 86053 + Kinase-PPPase
pfam HRGMv2_4162_1 HRGMv2_4162_1_87 86204 87250 + DAHP_synth_1
TC HRGMv2_4162_1 HRGMv2_4162_1_88 87733 89718 + 1.B.14.2.14
pfam HRGMv2_4162_1 HRGMv2_4162_1_89 89767 90795 + HemS | HemS | ChuX_HutX | ChuX_HutX
TC HRGMv2_4162_1 HRGMv2_4162_1_90 90792 91613 + 3.A.1.14.16
TC HRGMv2_4162_1 HRGMv2_4162_1_91 91613 92605 + 3.A.1.14.5
TC HRGMv2_4162_1 HRGMv2_4162_1_92 92598 93377 + 3.A.1.14.16
Gene ID: HRGMv2_4162_1_75
Type: TC
Location: 68977 - 70092 (+)
Gene ID: HRGMv2_4162_1_76
Type: CAZyme
Location: 70403 - 72778 (-)
Gene ID: HRGMv2_4162_1_77
Type: TC
Location: 72783 - 74183 (-)
Gene ID: HRGMv2_4162_1_78
Type: TC
Location: 74418 - 75491 (-)
Gene ID: HRGMv2_4162_1_79
Type: TF
Location: 75587 - 76648 (-)
Gene ID: HRGMv2_4162_1_80
Type: STP
Location: 76829 - 78115 (+)
Gene ID: HRGMv2_4162_1_81
Type: TC
Location: 78125 - 78991 (+)
Gene ID: HRGMv2_4162_1_82
Type: TC
Location: 78992 - 79819 (+)
Gene ID: HRGMv2_4162_1_83
Type: CAZyme
Location: 79831 - 81411 (+)
Gene ID: HRGMv2_4162_1_84
Type: CAZyme
Location: 81395 - 82456 (+)
Gene ID: HRGMv2_4162_1_85
Type: TC
Location: 82507 - 84885 (-)
Gene ID: HRGMv2_4162_1_86
Type: pfam
Location: 85220 - 86053 (+)
Gene ID: HRGMv2_4162_1_87
Type: pfam
Location: 86204 - 87250 (+)
Gene ID: HRGMv2_4162_1_88
Type: TC
Location: 87733 - 89718 (+)
Gene ID: HRGMv2_4162_1_89
Type: pfam
Location: 89767 - 90795 (+)
Gene ID: HRGMv2_4162_1_90
Type: TC
Location: 90792 - 91613 (+)
Gene ID: HRGMv2_4162_1_91
Type: TC
Location: 91613 - 92605 (+)
Gene ID: HRGMv2_4162_1_92
Type: TC
Location: 92598 - 93377 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4162_1_75 vegetarian > vegan 1.56924 0.01976

🧭 Explore Read Mapping of CGC

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