dbCAN Logo

Cluster: HRGMv2_4153_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4153_33 HRGMv2_4153_33_1 368 1063 - 2.A.122.1.7
TC HRGMv2_4153_33 HRGMv2_4153_33_2 1051 1434 - 1.E.14.1.16
pfam HRGMv2_4153_33 HRGMv2_4153_33_3 1461 2483 - 3Beta_HSD | Epimerase | Polysacc_synt_2 | NAD_binding_4 | GDP_Man_Dehyd
CAZyme HRGMv2_4153_33 HRGMv2_4153_33_4 2887 4041 + GT4
TC HRGMv2_4153_33 HRGMv2_4153_33_5 4038 5387 + 9.B.18.1.3
pfam HRGMv2_4153_33 HRGMv2_4153_33_6 5594 6643 - ApbE
TC HRGMv2_4153_33 HRGMv2_4153_33_7 6669 7595 - 3.D.6.1.3
TC HRGMv2_4153_33 HRGMv2_4153_33_8 8356 8931 - 3.D.6.1.2
TC HRGMv2_4153_33 HRGMv2_4153_33_9 9065 9742 - 3.D.6.1.2
TC HRGMv2_4153_33 HRGMv2_4153_33_10 9807 10382 - 3.D.6.1.3
TC HRGMv2_4153_33 HRGMv2_4153_33_11 10379 11338 - 3.D.6.1.2
Gene ID: HRGMv2_4153_33_1
Type: TC
Location: 368 - 1063 (-)
Gene ID: HRGMv2_4153_33_2
Type: TC
Location: 1051 - 1434 (-)
Gene ID: HRGMv2_4153_33_3
Type: pfam
Location: 1461 - 2483 (-)
Gene ID: HRGMv2_4153_33_4
Type: CAZyme
Location: 2887 - 4041 (+)
Gene ID: HRGMv2_4153_33_5
Type: TC
Location: 4038 - 5387 (+)
Gene ID: HRGMv2_4153_33_6
Type: pfam
Location: 5594 - 6643 (-)
Gene ID: HRGMv2_4153_33_7
Type: TC
Location: 6669 - 7595 (-)
Gene ID: HRGMv2_4153_33_8
Type: TC
Location: 8356 - 8931 (-)
Gene ID: HRGMv2_4153_33_9
Type: TC
Location: 9065 - 9742 (-)
Gene ID: HRGMv2_4153_33_10
Type: TC
Location: 9807 - 10382 (-)
Gene ID: HRGMv2_4153_33_11
Type: TC
Location: 10379 - 11338 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4153_33_9 vegetarian > vegan 1.35873 0.01135

🧭 Explore Read Mapping of CGC

← Back to Cluster List