Cluster: HRGMv2_4153_CGC12
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4153
- CGC Family ID: CGCFAM_06524
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4153_165 | HRGMv2_4153_165_2 | 999 | 1592 | + | 3.A.6.2.1 |
| pfam | HRGMv2_4153_165 | HRGMv2_4153_165_3 | 1585 | 2154 | + | FliO |
| TC | HRGMv2_4153_165 | HRGMv2_4153_165_4 | 2099 | 2884 | + | 3.A.6.2.1 |
| TC | HRGMv2_4153_165 | HRGMv2_4153_165_5 | 2905 | 3174 | + | 3.A.6.2.1 |
| NULL(UNKNOWN) | HRGMv2_4153_165 | HRGMv2_4153_165_6 | 3448 | 3705 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_4153_165 | HRGMv2_4153_165_7 | 3813 | 4616 | - | SpoU_methylase | SpoU_sub_bind |
| CAZyme | HRGMv2_4153_165 | HRGMv2_4153_165_8 | 4767 | 6434 | + | GH23 |
Gene ID: HRGMv2_4153_165_2
Type: TC
Location: 999 - 1592 (+)
Type: TC
Location: 999 - 1592 (+)
Gene ID: HRGMv2_4153_165_3
Type: pfam
Location: 1585 - 2154 (+)
Type: pfam
Location: 1585 - 2154 (+)
Gene ID: HRGMv2_4153_165_4
Type: TC
Location: 2099 - 2884 (+)
Type: TC
Location: 2099 - 2884 (+)
Gene ID: HRGMv2_4153_165_5
Type: TC
Location: 2905 - 3174 (+)
Type: TC
Location: 2905 - 3174 (+)
Gene ID: HRGMv2_4153_165_6
Type:
Location: 3448 - 3705 (-)
Type:
Location: 3448 - 3705 (-)
Gene ID: HRGMv2_4153_165_7
Type: pfam
Location: 3813 - 4616 (-)
Type: pfam
Location: 3813 - 4616 (-)
Gene ID: HRGMv2_4153_165_8
Type: CAZyme
Location: 4767 - 6434 (+)
Type: CAZyme
Location: 4767 - 6434 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Desulfobacterota
Class
Desulfovibrionia
Order
Desulfovibrionales
Family
Desulfovibrionaceae
Genus
Desulfovibrio
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.