Cluster: HRGMv2_4152_CGC6
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4152
- CGC Family ID: CGCFAM_00553
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4152_4 | HRGMv2_4152_4_214 | 202092 | 202625 | - | 3.D.1.8.1 |
| CAZyme | HRGMv2_4152_4 | HRGMv2_4152_4_215 | 203039 | 203995 | - | GT81 |
| pfam | HRGMv2_4152_4 | HRGMv2_4152_4_216 | 204173 | 204562 | + | GtrA_DPMS_TM |
| pfam | HRGMv2_4152_4 | HRGMv2_4152_4_217 | 204716 | 206071 | - | TRAM | tRNA_U5-meth_tr |
| CAZyme | HRGMv2_4152_4 | HRGMv2_4152_4_218 | 206480 | 207697 | + | GT28 |
| TC | HRGMv2_4152_4 | HRGMv2_4152_4_219 | 207778 | 209313 | + | 1.I.1.1.3 |
Gene ID: HRGMv2_4152_4_214
Type: TC
Location: 202092 - 202625 (-)
Type: TC
Location: 202092 - 202625 (-)
Gene ID: HRGMv2_4152_4_215
Type: CAZyme
Location: 203039 - 203995 (-)
Type: CAZyme
Location: 203039 - 203995 (-)
Gene ID: HRGMv2_4152_4_216
Type: pfam
Location: 204173 - 204562 (+)
Type: pfam
Location: 204173 - 204562 (+)
Gene ID: HRGMv2_4152_4_217
Type: pfam
Location: 204716 - 206071 (-)
Type: pfam
Location: 204716 - 206071 (-)
Gene ID: HRGMv2_4152_4_218
Type: CAZyme
Location: 206480 - 207697 (+)
Type: CAZyme
Location: 206480 - 207697 (+)
Gene ID: HRGMv2_4152_4_219
Type: TC
Location: 207778 - 209313 (+)
Type: TC
Location: 207778 - 209313 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Eggerthellaceae
Genus
Aphodovivens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.