Cluster: HRGMv2_4151_CGC1
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4151
- CGC Family ID: CGCFAM_00553
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4151_28 | HRGMv2_4151_28_10 | 7717 | 9210 | - | 1.I.1.1.3 |
| CAZyme | HRGMv2_4151_28 | HRGMv2_4151_28_11 | 9361 | 10782 | - | GT28 |
| pfam | HRGMv2_4151_28 | HRGMv2_4151_28_12 | 10984 | 12333 | + | TRAM | tRNA_U5-meth_tr | tRNA_U5-meth_tr |
| pfam | HRGMv2_4151_28 | HRGMv2_4151_28_13 | 12733 | 13122 | - | GtrA_DPMS_TM |
| CAZyme | HRGMv2_4151_28 | HRGMv2_4151_28_14 | 13324 | 14277 | + | GT2 |
| TC | HRGMv2_4151_28 | HRGMv2_4151_28_15 | 14742 | 15275 | + | 3.D.1.8.1 |
Gene ID: HRGMv2_4151_28_10
Type: TC
Location: 7717 - 9210 (-)
Type: TC
Location: 7717 - 9210 (-)
Gene ID: HRGMv2_4151_28_11
Type: CAZyme
Location: 9361 - 10782 (-)
Type: CAZyme
Location: 9361 - 10782 (-)
Gene ID: HRGMv2_4151_28_12
Type: pfam
Location: 10984 - 12333 (+)
Type: pfam
Location: 10984 - 12333 (+)
Gene ID: HRGMv2_4151_28_13
Type: pfam
Location: 12733 - 13122 (-)
Type: pfam
Location: 12733 - 13122 (-)
Gene ID: HRGMv2_4151_28_14
Type: CAZyme
Location: 13324 - 14277 (+)
Type: CAZyme
Location: 13324 - 14277 (+)
Gene ID: HRGMv2_4151_28_15
Type: TC
Location: 14742 - 15275 (+)
Type: TC
Location: 14742 - 15275 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Eggerthellaceae
Genus
Aphodovivens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4151_28_13 | vegetarian > omnivore | 1.01280 | 0.02055 |