Cluster: HRGMv2_4150_CGC3
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4150
- CGC Family ID: CGCFAM_00553
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4150_24 | HRGMv2_4150_24_18 | 21355 | 21879 | - | 3.D.1.8.1 |
| pfam | HRGMv2_4150_24 | HRGMv2_4150_24_19 | 22295 | 23638 | - | TRAM | tRNA_U5-meth_tr |
| CAZyme | HRGMv2_4150_24 | HRGMv2_4150_24_20 | 23913 | 24899 | - | GT2 |
| pfam | HRGMv2_4150_24 | HRGMv2_4150_24_21 | 25160 | 25555 | + | GtrA_DPMS_TM |
| CAZyme | HRGMv2_4150_24 | HRGMv2_4150_24_22 | 25559 | 26899 | + | GT28 |
| TC | HRGMv2_4150_24 | HRGMv2_4150_24_23 | 26957 | 28516 | + | 1.I.1.1.3 |
Gene ID: HRGMv2_4150_24_18
Type: TC
Location: 21355 - 21879 (-)
Type: TC
Location: 21355 - 21879 (-)
Gene ID: HRGMv2_4150_24_19
Type: pfam
Location: 22295 - 23638 (-)
Type: pfam
Location: 22295 - 23638 (-)
Gene ID: HRGMv2_4150_24_20
Type: CAZyme
Location: 23913 - 24899 (-)
Type: CAZyme
Location: 23913 - 24899 (-)
Gene ID: HRGMv2_4150_24_21
Type: pfam
Location: 25160 - 25555 (+)
Type: pfam
Location: 25160 - 25555 (+)
Gene ID: HRGMv2_4150_24_22
Type: CAZyme
Location: 25559 - 26899 (+)
Type: CAZyme
Location: 25559 - 26899 (+)
Gene ID: HRGMv2_4150_24_23
Type: TC
Location: 26957 - 28516 (+)
Type: TC
Location: 26957 - 28516 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Eggerthellaceae
Genus
Ellagibacter
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4150_24_20 | vegetarian > omnivore | 1.05717 | 0.00148 |