Cluster: HRGMv2_4143_CGC8
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate: host glycan
- Genome ID: HRGMv2_4143
- CGC Family ID: CGCFAM_00575
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4143_6 | HRGMv2_4143_6_16 | 15545 | 17362 | + | 3.A.1.210.9 |
| pfam | HRGMv2_4143_6 | HRGMv2_4143_6_17 | 17362 | 17841 | + | RNase_H |
| CAZyme | HRGMv2_4143_6 | HRGMv2_4143_6_18 | 18118 | 19203 | + | GH170 |
| CAZyme | HRGMv2_4143_6 | HRGMv2_4143_6_19 | 19208 | 20539 | + | GH4 |
| TC | HRGMv2_4143_6 | HRGMv2_4143_6_20 | 20627 | 20929 | + | 4.A.3.2.8 |
| TC | HRGMv2_4143_6 | HRGMv2_4143_6_21 | 20951 | 22381 | + | 4.A.3.2.4 |
Gene ID: HRGMv2_4143_6_16
Type: TC
Location: 15545 - 17362 (+)
Type: TC
Location: 15545 - 17362 (+)
Gene ID: HRGMv2_4143_6_17
Type: pfam
Location: 17362 - 17841 (+)
Type: pfam
Location: 17362 - 17841 (+)
Gene ID: HRGMv2_4143_6_18
Type: CAZyme
Location: 18118 - 19203 (+)
Type: CAZyme
Location: 18118 - 19203 (+)
Gene ID: HRGMv2_4143_6_19
Type: CAZyme
Location: 19208 - 20539 (+)
Type: CAZyme
Location: 19208 - 20539 (+)
Gene ID: HRGMv2_4143_6_20
Type: TC
Location: 20627 - 20929 (+)
Type: TC
Location: 20627 - 20929 (+)
Gene ID: HRGMv2_4143_6_21
Type: TC
Location: 20951 - 22381 (+)
Type: TC
Location: 20951 - 22381 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Atopobiaceae
Genus
Leptogranulimonas
Species
Leptogranulimonas sp012584445
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.