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Cluster: HRGMv2_4143_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4143_16 HRGMv2_4143_16_38 39025 40167 - GT2
TC HRGMv2_4143_16 HRGMv2_4143_16_39 40349 41425 - 3.A.1.20.1
TC HRGMv2_4143_16 HRGMv2_4143_16_40 41429 43204 - 3.A.1.20.2
STP HRGMv2_4143_16 HRGMv2_4143_16_41 43363 44493 - SBP_bac_1
CAZyme HRGMv2_4143_16 HRGMv2_4143_16_42 44805 45863 - GT2
CAZyme HRGMv2_4143_16 HRGMv2_4143_16_43 45872 46981 - GT2
TC HRGMv2_4143_16 HRGMv2_4143_16_44 46953 47765 - 3.A.1.103.1
TC HRGMv2_4143_16 HRGMv2_4143_16_45 47774 48652 - 3.A.1.103.6
Gene ID: HRGMv2_4143_16_38
Type: CAZyme
Location: 39025 - 40167 (-)
Gene ID: HRGMv2_4143_16_39
Type: TC
Location: 40349 - 41425 (-)
Gene ID: HRGMv2_4143_16_40
Type: TC
Location: 41429 - 43204 (-)
Gene ID: HRGMv2_4143_16_41
Type: STP
Location: 43363 - 44493 (-)
Gene ID: HRGMv2_4143_16_42
Type: CAZyme
Location: 44805 - 45863 (-)
Gene ID: HRGMv2_4143_16_43
Type: CAZyme
Location: 45872 - 46981 (-)
Gene ID: HRGMv2_4143_16_44
Type: TC
Location: 46953 - 47765 (-)
Gene ID: HRGMv2_4143_16_45
Type: TC
Location: 47774 - 48652 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4143_16_39 vegetarian > vegan 1.20275 0.01033
HRGMv2_4143_16_40 vegetarian > vegan 1.10576 0.01033
HRGMv2_4143_16_41 vegetarian > vegan 1.08325 0.01033

🧭 Explore Read Mapping of CGC

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