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Cluster: HRGMv2_4143_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4143_10 HRGMv2_4143_10_5 4677 7208 - GH3
CAZyme HRGMv2_4143_10 HRGMv2_4143_10_6 7257 10220 - GH3
CAZyme HRGMv2_4143_10 HRGMv2_4143_10_7 10377 12812 - GH3
NULL(UNKNOWN) HRGMv2_4143_10 HRGMv2_4143_10_8 12992 13456 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4143_10 HRGMv2_4143_10_9 13725 16175 - GH3
TF HRGMv2_4143_10 HRGMv2_4143_10_10 16722 17438 + LytTR
pfam HRGMv2_4143_10 HRGMv2_4143_10_11 17455 18813 + HATPase_c_5
TC HRGMv2_4143_10 HRGMv2_4143_10_12 18951 19760 - 3.A.1.3.25
TC HRGMv2_4143_10 HRGMv2_4143_10_13 19753 21219 - 3.A.1.3.25
CAZyme HRGMv2_4143_10 HRGMv2_4143_10_14 21620 23698 - GH3
Gene ID: HRGMv2_4143_10_5
Type: CAZyme
Location: 4677 - 7208 (-)
Gene ID: HRGMv2_4143_10_6
Type: CAZyme
Location: 7257 - 10220 (-)
Gene ID: HRGMv2_4143_10_7
Type: CAZyme
Location: 10377 - 12812 (-)
Gene ID: HRGMv2_4143_10_8
Type:
Location: 12992 - 13456 (-)
Gene ID: HRGMv2_4143_10_9
Type: CAZyme
Location: 13725 - 16175 (-)
Gene ID: HRGMv2_4143_10_10
Type: TF
Location: 16722 - 17438 (+)
Gene ID: HRGMv2_4143_10_11
Type: pfam
Location: 17455 - 18813 (+)
Gene ID: HRGMv2_4143_10_12
Type: TC
Location: 18951 - 19760 (-)
Gene ID: HRGMv2_4143_10_13
Type: TC
Location: 19753 - 21219 (-)
Gene ID: HRGMv2_4143_10_14
Type: CAZyme
Location: 21620 - 23698 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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