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Cluster: HRGMv2_4126_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4126_24 HRGMv2_4126_24_1 115 1446 - 4.A.3.2.2
CAZyme HRGMv2_4126_24 HRGMv2_4126_24_2 1516 2916 - GH1
TF HRGMv2_4126_24 HRGMv2_4126_24_3 3067 3786 + GntR
TC HRGMv2_4126_24 HRGMv2_4126_24_4 3865 4308 - 1.A.22.1.8
pfam HRGMv2_4126_24 HRGMv2_4126_24_5 4323 4784 - Tyr_Deacylase
peptidase HRGMv2_4126_24 HRGMv2_4126_24_6 4849 6630 - M32.UPW
TC HRGMv2_4126_24 HRGMv2_4126_24_7 6923 7378 + 4.A.2.1.8
NULL(UNKNOWN) HRGMv2_4126_24 HRGMv2_4126_24_8 7535 8278 - NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) HRGMv2_4126_24 HRGMv2_4126_24_9 8289 8927 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4126_24 HRGMv2_4126_24_10 8971 9765 - 3.A.1.14.11
TC HRGMv2_4126_24 HRGMv2_4126_24_11 9758 10861 - 3.A.1.14.11
Gene ID: HRGMv2_4126_24_1
Type: TC
Location: 115 - 1446 (-)
Gene ID: HRGMv2_4126_24_2
Type: CAZyme
Location: 1516 - 2916 (-)
Gene ID: HRGMv2_4126_24_3
Type: TF
Location: 3067 - 3786 (+)
Gene ID: HRGMv2_4126_24_4
Type: TC
Location: 3865 - 4308 (-)
Gene ID: HRGMv2_4126_24_5
Type: pfam
Location: 4323 - 4784 (-)
Gene ID: HRGMv2_4126_24_6
Type: peptidase
Location: 4849 - 6630 (-)
Gene ID: HRGMv2_4126_24_7
Type: TC
Location: 6923 - 7378 (+)
Gene ID: HRGMv2_4126_24_8
Type:
Location: 7535 - 8278 (-)
Gene ID: HRGMv2_4126_24_9
Type:
Location: 8289 - 8927 (-)
Gene ID: HRGMv2_4126_24_10
Type: TC
Location: 8971 - 9765 (-)
Gene ID: HRGMv2_4126_24_11
Type: TC
Location: 9758 - 10861 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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