Cluster: HRGMv2_4126_CGC1
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 4
- Substrate: alpha-glucan
- Genome ID: HRGMv2_4126
- CGC Family ID: CGCFAM_00004
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4126_3 | HRGMv2_4126_3_5 | 5774 | 9244 | - | GH13_39 | GH77 |
| CAZyme | HRGMv2_4126_3 | HRGMv2_4126_3_6 | 9290 | 10792 | - | GT5 |
| pfam | HRGMv2_4126_3 | HRGMv2_4126_3_7 | 10899 | 11993 | - | NTP_transferase | Hexapep_GlmU |
| pfam | HRGMv2_4126_3 | HRGMv2_4126_3_8 | 11990 | 13144 | - | NTP_transferase | Hexapep_GlmU |
| CAZyme | HRGMv2_4126_3 | HRGMv2_4126_3_9 | 13208 | 15625 | - | GT35 |
| CAZyme | HRGMv2_4126_3 | HRGMv2_4126_3_10 | 15742 | 18024 | - | CBM48 | GH13_9 |
| STP | HRGMv2_4126_3 | HRGMv2_4126_3_11 | 18320 | 19102 | + | HhH-GPD |
| pfam | HRGMv2_4126_3 | HRGMv2_4126_3_12 | 19137 | 20171 | - | Acyl_transf_3 |
| TC | HRGMv2_4126_3 | HRGMv2_4126_3_13 | 20471 | 22330 | + | 1.A.26.1.2 |
| TC | HRGMv2_4126_3 | HRGMv2_4126_3_14 | 22343 | 23752 | + | 2.A.55.3.6 |
| pfam | HRGMv2_4126_3 | HRGMv2_4126_3_15 | 23771 | 24553 | - | PRC |
| pfam | HRGMv2_4126_3 | HRGMv2_4126_3_16 | 24731 | 25123 | - | YtxH |
| TC | HRGMv2_4126_3 | HRGMv2_4126_3_17 | 25341 | 27521 | - | 3.A.1.134.12 |
| TC | HRGMv2_4126_3 | HRGMv2_4126_3_18 | 27505 | 28206 | - | 3.A.1.134.12 |
Gene ID: HRGMv2_4126_3_5
Type: CAZyme
Location: 5774 - 9244 (-)
Type: CAZyme
Location: 5774 - 9244 (-)
Gene ID: HRGMv2_4126_3_6
Type: CAZyme
Location: 9290 - 10792 (-)
Type: CAZyme
Location: 9290 - 10792 (-)
Gene ID: HRGMv2_4126_3_7
Type: pfam
Location: 10899 - 11993 (-)
Type: pfam
Location: 10899 - 11993 (-)
Gene ID: HRGMv2_4126_3_8
Type: pfam
Location: 11990 - 13144 (-)
Type: pfam
Location: 11990 - 13144 (-)
Gene ID: HRGMv2_4126_3_9
Type: CAZyme
Location: 13208 - 15625 (-)
Type: CAZyme
Location: 13208 - 15625 (-)
Gene ID: HRGMv2_4126_3_10
Type: CAZyme
Location: 15742 - 18024 (-)
Type: CAZyme
Location: 15742 - 18024 (-)
Gene ID: HRGMv2_4126_3_11
Type: STP
Location: 18320 - 19102 (+)
Type: STP
Location: 18320 - 19102 (+)
Gene ID: HRGMv2_4126_3_12
Type: pfam
Location: 19137 - 20171 (-)
Type: pfam
Location: 19137 - 20171 (-)
Gene ID: HRGMv2_4126_3_13
Type: TC
Location: 20471 - 22330 (+)
Type: TC
Location: 20471 - 22330 (+)
Gene ID: HRGMv2_4126_3_14
Type: TC
Location: 22343 - 23752 (+)
Type: TC
Location: 22343 - 23752 (+)
Gene ID: HRGMv2_4126_3_15
Type: pfam
Location: 23771 - 24553 (-)
Type: pfam
Location: 23771 - 24553 (-)
Gene ID: HRGMv2_4126_3_16
Type: pfam
Location: 24731 - 25123 (-)
Type: pfam
Location: 24731 - 25123 (-)
Gene ID: HRGMv2_4126_3_17
Type: TC
Location: 25341 - 27521 (-)
Type: TC
Location: 25341 - 27521 (-)
Gene ID: HRGMv2_4126_3_18
Type: TC
Location: 27505 - 28206 (-)
Type: TC
Location: 27505 - 28206 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Atopobiaceae
Genus
Fannyhessea
Species
Fannyhessea sp947090525
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.