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Cluster: HRGMv2_4123_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4123_4 HRGMv2_4123_4_154 199465 200364 + 9.B.34.1.2
TF HRGMv2_4123_4 HRGMv2_4123_4_155 200701 200937 - HTH_3
pfam HRGMv2_4123_4 HRGMv2_4123_4_156 201267 201779 + KOW | NusG
TC HRGMv2_4123_4 HRGMv2_4123_4_157 201831 202550 + 9.B.18.1.3
pfam HRGMv2_4123_4 HRGMv2_4123_4_158 202592 203539 + 3Beta_HSD | Epimerase | NAD_binding_10 | GDP_Man_Dehyd
CAZyme HRGMv2_4123_4 HRGMv2_4123_4_159 203524 204654 + GT4
pfam HRGMv2_4123_4 HRGMv2_4123_4_160 204665 205861 + PS_pyruv_trans
pfam HRGMv2_4123_4 HRGMv2_4123_4_161 205848 207062 + FrhB_FdhB_N | FrhB_FdhB_C | Fer4_7
CAZyme HRGMv2_4123_4 HRGMv2_4123_4_162 207059 208048 + GT2
Gene ID: HRGMv2_4123_4_154
Type: TC
Location: 199465 - 200364 (+)
Gene ID: HRGMv2_4123_4_155
Type: TF
Location: 200701 - 200937 (-)
Gene ID: HRGMv2_4123_4_156
Type: pfam
Location: 201267 - 201779 (+)
Gene ID: HRGMv2_4123_4_157
Type: TC
Location: 201831 - 202550 (+)
Gene ID: HRGMv2_4123_4_158
Type: pfam
Location: 202592 - 203539 (+)
Gene ID: HRGMv2_4123_4_159
Type: CAZyme
Location: 203524 - 204654 (+)
Gene ID: HRGMv2_4123_4_160
Type: pfam
Location: 204665 - 205861 (+)
Gene ID: HRGMv2_4123_4_161
Type: pfam
Location: 205848 - 207062 (+)
Gene ID: HRGMv2_4123_4_162
Type: CAZyme
Location: 207059 - 208048 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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