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Cluster: HRGMv2_4123_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4123_4 HRGMv2_4123_4_17 21474 23081 + GT2 | GT2
CAZyme HRGMv2_4123_4 HRGMv2_4123_4_18 23088 24212 - GT2
TC HRGMv2_4123_4 HRGMv2_4123_4_19 24228 26057 - 3.A.1.103.5
TC HRGMv2_4123_4 HRGMv2_4123_4_20 26073 26936 - 3.A.1.103.6
pfam HRGMv2_4123_4 HRGMv2_4123_4_21 27023 29074 + DUF6541
CAZyme HRGMv2_4123_4 HRGMv2_4123_4_22 29114 30094 + GT2
CAZyme HRGMv2_4123_4 HRGMv2_4123_4_23 30104 31213 + GT2
TC HRGMv2_4123_4 HRGMv2_4123_4_24 31312 32433 + 9.B.146.1.1
pfam HRGMv2_4123_4 HRGMv2_4123_4_25 32518 33435 + LytR_cpsA_psr
TC HRGMv2_4123_4 HRGMv2_4123_4_26 33514 34335 + 3.A.1.104.1
TC HRGMv2_4123_4 HRGMv2_4123_4_27 34325 35122 + 3.A.1.103.1
pfam HRGMv2_4123_4 HRGMv2_4123_4_28 35124 35852 + IspD | NTP_transf_3
pfam HRGMv2_4123_4 HRGMv2_4123_4_29 35855 36880 + ADH_zinc_N | ADH_N
CAZyme HRGMv2_4123_4 HRGMv2_4123_4_30 36881 38086 + GT2
CAZyme HRGMv2_4123_4 HRGMv2_4123_4_31 38108 40867 + GT2
pfam HRGMv2_4123_4 HRGMv2_4123_4_32 40874 42019 + Glyphos_transf
pfam HRGMv2_4123_4 HRGMv2_4123_4_33 42134 43234 + Epimerase_2
CAZyme HRGMv2_4123_4 HRGMv2_4123_4_34 43268 46006 + GT2
pfam HRGMv2_4123_4 HRGMv2_4123_4_35 46276 47856 + Glyco_transf_4
pfam HRGMv2_4123_4 HRGMv2_4123_4_36 48406 49242 + LytR_cpsA_psr
CAZyme HRGMv2_4123_4 HRGMv2_4123_4_37 49261 50283 + GT2
pfam HRGMv2_4123_4 HRGMv2_4123_4_38 50317 51303 + LytR_cpsA_psr
CAZyme HRGMv2_4123_4 HRGMv2_4123_4_39 51354 52463 - GT2
Gene ID: HRGMv2_4123_4_17
Type: CAZyme
Location: 21474 - 23081 (+)
Gene ID: HRGMv2_4123_4_18
Type: CAZyme
Location: 23088 - 24212 (-)
Gene ID: HRGMv2_4123_4_19
Type: TC
Location: 24228 - 26057 (-)
Gene ID: HRGMv2_4123_4_20
Type: TC
Location: 26073 - 26936 (-)
Gene ID: HRGMv2_4123_4_21
Type: pfam
Location: 27023 - 29074 (+)
Gene ID: HRGMv2_4123_4_22
Type: CAZyme
Location: 29114 - 30094 (+)
Gene ID: HRGMv2_4123_4_23
Type: CAZyme
Location: 30104 - 31213 (+)
Gene ID: HRGMv2_4123_4_24
Type: TC
Location: 31312 - 32433 (+)
Gene ID: HRGMv2_4123_4_25
Type: pfam
Location: 32518 - 33435 (+)
Gene ID: HRGMv2_4123_4_26
Type: TC
Location: 33514 - 34335 (+)
Gene ID: HRGMv2_4123_4_27
Type: TC
Location: 34325 - 35122 (+)
Gene ID: HRGMv2_4123_4_28
Type: pfam
Location: 35124 - 35852 (+)
Gene ID: HRGMv2_4123_4_29
Type: pfam
Location: 35855 - 36880 (+)
Gene ID: HRGMv2_4123_4_30
Type: CAZyme
Location: 36881 - 38086 (+)
Gene ID: HRGMv2_4123_4_31
Type: CAZyme
Location: 38108 - 40867 (+)
Gene ID: HRGMv2_4123_4_32
Type: pfam
Location: 40874 - 42019 (+)
Gene ID: HRGMv2_4123_4_33
Type: pfam
Location: 42134 - 43234 (+)
Gene ID: HRGMv2_4123_4_34
Type: CAZyme
Location: 43268 - 46006 (+)
Gene ID: HRGMv2_4123_4_35
Type: pfam
Location: 46276 - 47856 (+)
Gene ID: HRGMv2_4123_4_36
Type: pfam
Location: 48406 - 49242 (+)
Gene ID: HRGMv2_4123_4_37
Type: CAZyme
Location: 49261 - 50283 (+)
Gene ID: HRGMv2_4123_4_38
Type: pfam
Location: 50317 - 51303 (+)
Gene ID: HRGMv2_4123_4_39
Type: CAZyme
Location: 51354 - 52463 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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