Cluster: HRGMv2_4123_CGC14
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4123
- CGC Family ID: CGCFAM_00562
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4123_13 | HRGMv2_4123_13_40 | 41232 | 42257 | - | 9.B.18.2.1 |
| NULL(UNKNOWN) | HRGMv2_4123_13 | HRGMv2_4123_13_41 | 42349 | 43797 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4123_13 | HRGMv2_4123_13_42 | 43838 | 44917 | - | GT4 |
| pfam | HRGMv2_4123_13 | HRGMv2_4123_13_43 | 44924 | 46273 | - | NTP_transferase | MannoseP_isomer | Cupin_2 |
| CAZyme | HRGMv2_4123_13 | HRGMv2_4123_13_44 | 46270 | 47418 | - | GT4 |
| pfam | HRGMv2_4123_13 | HRGMv2_4123_13_45 | 47415 | 48350 | - | 3Beta_HSD | Epimerase | NAD_binding_10 | GDP_Man_Dehyd |
| TC | HRGMv2_4123_13 | HRGMv2_4123_13_46 | 48462 | 49064 | - | 9.B.18.1.2 |
Gene ID: HRGMv2_4123_13_40
Type: TC
Location: 41232 - 42257 (-)
Type: TC
Location: 41232 - 42257 (-)
Gene ID: HRGMv2_4123_13_41
Type:
Location: 42349 - 43797 (-)
Type:
Location: 42349 - 43797 (-)
Gene ID: HRGMv2_4123_13_42
Type: CAZyme
Location: 43838 - 44917 (-)
Type: CAZyme
Location: 43838 - 44917 (-)
Gene ID: HRGMv2_4123_13_43
Type: pfam
Location: 44924 - 46273 (-)
Type: pfam
Location: 44924 - 46273 (-)
Gene ID: HRGMv2_4123_13_44
Type: CAZyme
Location: 46270 - 47418 (-)
Type: CAZyme
Location: 46270 - 47418 (-)
Gene ID: HRGMv2_4123_13_45
Type: pfam
Location: 47415 - 48350 (-)
Type: pfam
Location: 47415 - 48350 (-)
Gene ID: HRGMv2_4123_13_46
Type: TC
Location: 48462 - 49064 (-)
Type: TC
Location: 48462 - 49064 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Eggerthellaceae
Genus
Eggerthella
Species
Eggerthella sinensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.