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Cluster: HRGMv2_4123_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4123_1 HRGMv2_4123_1_363 424245 426497 - 2.A.21.9.2
CAZyme HRGMv2_4123_1 HRGMv2_4123_1_364 426685 427668 + GT81
pfam HRGMv2_4123_1 HRGMv2_4123_1_365 427632 431150 - UvrD-helicase | PDDEXK_1 | AAA_19 | UvrD_C
pfam HRGMv2_4123_1 HRGMv2_4123_1_366 431147 434068 - PDDEXK_1
TC HRGMv2_4123_1 HRGMv2_4123_1_367 434110 435024 + 2.A.7.3.62
TF HRGMv2_4123_1 HRGMv2_4123_1_368 435021 435917 - HTH_1
pfam HRGMv2_4123_1 HRGMv2_4123_1_369 436269 437186 - EamA | EamA
CAZyme HRGMv2_4123_1 HRGMv2_4123_1_370 437305 438747 + GT28
Gene ID: HRGMv2_4123_1_363
Type: TC
Location: 424245 - 426497 (-)
Gene ID: HRGMv2_4123_1_364
Type: CAZyme
Location: 426685 - 427668 (+)
Gene ID: HRGMv2_4123_1_365
Type: pfam
Location: 427632 - 431150 (-)
Gene ID: HRGMv2_4123_1_366
Type: pfam
Location: 431147 - 434068 (-)
Gene ID: HRGMv2_4123_1_367
Type: TC
Location: 434110 - 435024 (+)
Gene ID: HRGMv2_4123_1_368
Type: TF
Location: 435021 - 435917 (-)
Gene ID: HRGMv2_4123_1_369
Type: pfam
Location: 436269 - 437186 (-)
Gene ID: HRGMv2_4123_1_370
Type: CAZyme
Location: 437305 - 438747 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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