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Cluster: HRGMv2_4107_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4107_6 HRGMv2_4107_6_21 27485 28360 - 3.A.1.1.10
TC HRGMv2_4107_6 HRGMv2_4107_6_22 28372 29301 - 3.A.1.1.10
TC HRGMv2_4107_6 HRGMv2_4107_6_23 29540 31066 - 3.A.1.1.9
TF HRGMv2_4107_6 HRGMv2_4107_6_24 31594 33699 - HTH_AraC
NULL(UNKNOWN) HRGMv2_4107_6 HRGMv2_4107_6_25 33813 34421 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4107_6 HRGMv2_4107_6_26 34542 35636 + GH5_37
CAZyme HRGMv2_4107_6 HRGMv2_4107_6_27 35695 37419 - GH129
NULL(UNKNOWN) HRGMv2_4107_6 HRGMv2_4107_6_28 37626 38147 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4107_6 HRGMv2_4107_6_29 38144 39652 + GH31_19
Gene ID: HRGMv2_4107_6_21
Type: TC
Location: 27485 - 28360 (-)
Gene ID: HRGMv2_4107_6_22
Type: TC
Location: 28372 - 29301 (-)
Gene ID: HRGMv2_4107_6_23
Type: TC
Location: 29540 - 31066 (-)
Gene ID: HRGMv2_4107_6_24
Type: TF
Location: 31594 - 33699 (-)
Gene ID: HRGMv2_4107_6_25
Type:
Location: 33813 - 34421 (-)
Gene ID: HRGMv2_4107_6_26
Type: CAZyme
Location: 34542 - 35636 (+)
Gene ID: HRGMv2_4107_6_27
Type: CAZyme
Location: 35695 - 37419 (-)
Gene ID: HRGMv2_4107_6_28
Type:
Location: 37626 - 38147 (+)
Gene ID: HRGMv2_4107_6_29
Type: CAZyme
Location: 38144 - 39652 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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