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Cluster: HRGMv2_4107_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4107_20 HRGMv2_4107_20_11 12457 14193 + 3.A.1.135.5
TC HRGMv2_4107_20 HRGMv2_4107_20_12 14195 16156 + 3.A.1.135.5
STP HRGMv2_4107_20 HRGMv2_4107_20_13 16708 18051 + AAA
TC HRGMv2_4107_20 HRGMv2_4107_20_14 18061 18888 + 1.C.109.1.5
CAZyme HRGMv2_4107_20 HRGMv2_4107_20_15 19306 21237 + GH36
pfam HRGMv2_4107_20 HRGMv2_4107_20_16 21286 22647 + MatE | MatE | MurJ
STP HRGMv2_4107_20 HRGMv2_4107_20_17 23180 23932 - Response_reg | Spo0A_C
TC HRGMv2_4107_20 HRGMv2_4107_20_18 24173 25900 + 3.A.1.135.7
TC HRGMv2_4107_20 HRGMv2_4107_20_19 25897 27672 + 3.A.1.135.5
Gene ID: HRGMv2_4107_20_11
Type: TC
Location: 12457 - 14193 (+)
Gene ID: HRGMv2_4107_20_12
Type: TC
Location: 14195 - 16156 (+)
Gene ID: HRGMv2_4107_20_13
Type: STP
Location: 16708 - 18051 (+)
Gene ID: HRGMv2_4107_20_14
Type: TC
Location: 18061 - 18888 (+)
Gene ID: HRGMv2_4107_20_15
Type: CAZyme
Location: 19306 - 21237 (+)
Gene ID: HRGMv2_4107_20_16
Type: pfam
Location: 21286 - 22647 (+)
Gene ID: HRGMv2_4107_20_17
Type: STP
Location: 23180 - 23932 (-)
Gene ID: HRGMv2_4107_20_18
Type: TC
Location: 24173 - 25900 (+)
Gene ID: HRGMv2_4107_20_19
Type: TC
Location: 25897 - 27672 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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