Cluster: HRGMv2_4105_CGC24
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4105
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4105_4 | HRGMv2_4105_4_10 | 12916 | 13998 | + | GH179 |
| pfam | HRGMv2_4105_4 | HRGMv2_4105_4_11 | 14025 | 14741 | + | ThuA |
| TF | HRGMv2_4105_4 | HRGMv2_4105_4_12 | 15008 | 15553 | + | SpoVT_AbrB |
| TC | HRGMv2_4105_4 | HRGMv2_4105_4_13 | 15611 | 17152 | + | 2.A.66.2.14 |
Gene ID: HRGMv2_4105_4_10
Type: CAZyme
Location: 12916 - 13998 (+)
Type: CAZyme
Location: 12916 - 13998 (+)
Gene ID: HRGMv2_4105_4_11
Type: pfam
Location: 14025 - 14741 (+)
Type: pfam
Location: 14025 - 14741 (+)
Gene ID: HRGMv2_4105_4_12
Type: TF
Location: 15008 - 15553 (+)
Type: TF
Location: 15008 - 15553 (+)
Gene ID: HRGMv2_4105_4_13
Type: TC
Location: 15611 - 17152 (+)
Type: TC
Location: 15611 - 17152 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Borkfalkiaceae
Genus
Borkfalkia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4105_4_10 | omnivore > vegan | 2.06211 | 0.04014 |