Cluster: HRGMv2_4105_CGC18
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 8
- Substrate:
- Genome ID: HRGMv2_4105
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4105_3 | HRGMv2_4105_3_122 | 148901 | 150535 | + | GH110 |
| TF | HRGMv2_4105_3 | HRGMv2_4105_3_123 | 150940 | 151857 | - | HTH_AraC | HTH_AraC |
| TC | HRGMv2_4105_3 | HRGMv2_4105_3_124 | 152102 | 153916 | + | 3.A.1.1.29 |
| TC | HRGMv2_4105_3 | HRGMv2_4105_3_125 | 153931 | 154809 | + | 3.A.1.1.29 |
| NULL(UNKNOWN) | HRGMv2_4105_3 | HRGMv2_4105_3_126 | 154875 | 156518 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_4105_3 | HRGMv2_4105_3_127 | 156561 | 157877 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4105_3 | HRGMv2_4105_3_128 | 157885 | 159405 | + | GH173 |
| CAZyme | HRGMv2_4105_3 | HRGMv2_4105_3_129 | 159489 | 161003 | + | GH173 |
| CAZyme | HRGMv2_4105_3 | HRGMv2_4105_3_130 | 161026 | 162261 | + | GH175 |
| pfam | HRGMv2_4105_3 | HRGMv2_4105_3_131 | 162274 | 163122 | + | AP_endonuc_2 |
| CAZyme | HRGMv2_4105_3 | HRGMv2_4105_3_132 | 163119 | 164609 | + | GH32 |
| CAZyme | HRGMv2_4105_3 | HRGMv2_4105_3_133 | 164641 | 165720 | + | GH179 |
| CAZyme | HRGMv2_4105_3 | HRGMv2_4105_3_134 | 165737 | 166765 | + | GH177 |
| pfam | HRGMv2_4105_3 | HRGMv2_4105_3_135 | 166806 | 167672 | + | GFO_IDH_MocA |
| CAZyme | HRGMv2_4105_3 | HRGMv2_4105_3_136 | 167742 | 170156 | + | CBM67 | GH78 |
Gene ID: HRGMv2_4105_3_122
Type: CAZyme
Location: 148901 - 150535 (+)
Type: CAZyme
Location: 148901 - 150535 (+)
Gene ID: HRGMv2_4105_3_123
Type: TF
Location: 150940 - 151857 (-)
Type: TF
Location: 150940 - 151857 (-)
Gene ID: HRGMv2_4105_3_124
Type: TC
Location: 152102 - 153916 (+)
Type: TC
Location: 152102 - 153916 (+)
Gene ID: HRGMv2_4105_3_125
Type: TC
Location: 153931 - 154809 (+)
Type: TC
Location: 153931 - 154809 (+)
Gene ID: HRGMv2_4105_3_126
Type:
Location: 154875 - 156518 (+)
Type:
Location: 154875 - 156518 (+)
Gene ID: HRGMv2_4105_3_127
Type:
Location: 156561 - 157877 (+)
Type:
Location: 156561 - 157877 (+)
Gene ID: HRGMv2_4105_3_128
Type: CAZyme
Location: 157885 - 159405 (+)
Type: CAZyme
Location: 157885 - 159405 (+)
Gene ID: HRGMv2_4105_3_129
Type: CAZyme
Location: 159489 - 161003 (+)
Type: CAZyme
Location: 159489 - 161003 (+)
Gene ID: HRGMv2_4105_3_130
Type: CAZyme
Location: 161026 - 162261 (+)
Type: CAZyme
Location: 161026 - 162261 (+)
Gene ID: HRGMv2_4105_3_131
Type: pfam
Location: 162274 - 163122 (+)
Type: pfam
Location: 162274 - 163122 (+)
Gene ID: HRGMv2_4105_3_132
Type: CAZyme
Location: 163119 - 164609 (+)
Type: CAZyme
Location: 163119 - 164609 (+)
Gene ID: HRGMv2_4105_3_133
Type: CAZyme
Location: 164641 - 165720 (+)
Type: CAZyme
Location: 164641 - 165720 (+)
Gene ID: HRGMv2_4105_3_134
Type: CAZyme
Location: 165737 - 166765 (+)
Type: CAZyme
Location: 165737 - 166765 (+)
Gene ID: HRGMv2_4105_3_135
Type: pfam
Location: 166806 - 167672 (+)
Type: pfam
Location: 166806 - 167672 (+)
Gene ID: HRGMv2_4105_3_136
Type: CAZyme
Location: 167742 - 170156 (+)
Type: CAZyme
Location: 167742 - 170156 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Borkfalkiaceae
Genus
Borkfalkia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.