Cluster: HRGMv2_4105_CGC12
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4105
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4105_2 | HRGMv2_4105_2_141 | 167401 | 168318 | + | 3.A.1.1.11 |
| TC | HRGMv2_4105_2 | HRGMv2_4105_2_142 | 168318 | 169160 | + | 3.A.1.1.34 |
| TF | HRGMv2_4105_2 | HRGMv2_4105_2_143 | 169927 | 170967 | + | LacI |
| pfam | HRGMv2_4105_2 | HRGMv2_4105_2_144 | 171027 | 171605 | + | LacAB_rpiB |
| CAZyme | HRGMv2_4105_2 | HRGMv2_4105_2_145 | 171831 | 174647 | + | GH106 |
Gene ID: HRGMv2_4105_2_141
Type: TC
Location: 167401 - 168318 (+)
Type: TC
Location: 167401 - 168318 (+)
Gene ID: HRGMv2_4105_2_142
Type: TC
Location: 168318 - 169160 (+)
Type: TC
Location: 168318 - 169160 (+)
Gene ID: HRGMv2_4105_2_143
Type: TF
Location: 169927 - 170967 (+)
Type: TF
Location: 169927 - 170967 (+)
Gene ID: HRGMv2_4105_2_144
Type: pfam
Location: 171027 - 171605 (+)
Type: pfam
Location: 171027 - 171605 (+)
Gene ID: HRGMv2_4105_2_145
Type: CAZyme
Location: 171831 - 174647 (+)
Type: CAZyme
Location: 171831 - 174647 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Borkfalkiaceae
Genus
Borkfalkia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.