Cluster: HRGMv2_4105_CGC1
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4105
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4105_1 | HRGMv2_4105_1_16 | 19006 | 20892 | + | 4.A.1.2.9 |
| CAZyme | HRGMv2_4105_1 | HRGMv2_4105_1_17 | 20889 | 22286 | + | GH32 |
| STP | HRGMv2_4105_1 | HRGMv2_4105_1_18 | 22305 | 22559 | + | PTS-HPr |
| TC | HRGMv2_4105_1 | HRGMv2_4105_1_19 | 22578 | 24242 | + | 8.A.7.1.1 |
| peptidase | HRGMv2_4105_1 | HRGMv2_4105_1_20 | 24801 | 26204 | - | C44.UNW |
| TC | HRGMv2_4105_1 | HRGMv2_4105_1_21 | 26630 | 27481 | - | 2.A.115.1.2 |
| pfam | HRGMv2_4105_1 | HRGMv2_4105_1_22 | 27533 | 28804 | - | SDH_alpha |
| pfam | HRGMv2_4105_1 | HRGMv2_4105_1_23 | 28938 | 29333 | - | DUF3899 |
| TC | HRGMv2_4105_1 | HRGMv2_4105_1_24 | 29330 | 30559 | - | 3.A.1.5.19 |
| TC | HRGMv2_4105_1 | HRGMv2_4105_1_25 | 30549 | 32600 | - | 3.A.1.5.25 |
| TC | HRGMv2_4105_1 | HRGMv2_4105_1_26 | 32600 | 34099 | - | 3.A.1.5.19 |
| TC | HRGMv2_4105_1 | HRGMv2_4105_1_27 | 34101 | 35060 | - | 3.A.1.5.19 |
Gene ID: HRGMv2_4105_1_16
Type: TC
Location: 19006 - 20892 (+)
Type: TC
Location: 19006 - 20892 (+)
Gene ID: HRGMv2_4105_1_17
Type: CAZyme
Location: 20889 - 22286 (+)
Type: CAZyme
Location: 20889 - 22286 (+)
Gene ID: HRGMv2_4105_1_18
Type: STP
Location: 22305 - 22559 (+)
Type: STP
Location: 22305 - 22559 (+)
Gene ID: HRGMv2_4105_1_19
Type: TC
Location: 22578 - 24242 (+)
Type: TC
Location: 22578 - 24242 (+)
Gene ID: HRGMv2_4105_1_20
Type: peptidase
Location: 24801 - 26204 (-)
Type: peptidase
Location: 24801 - 26204 (-)
Gene ID: HRGMv2_4105_1_21
Type: TC
Location: 26630 - 27481 (-)
Type: TC
Location: 26630 - 27481 (-)
Gene ID: HRGMv2_4105_1_22
Type: pfam
Location: 27533 - 28804 (-)
Type: pfam
Location: 27533 - 28804 (-)
Gene ID: HRGMv2_4105_1_23
Type: pfam
Location: 28938 - 29333 (-)
Type: pfam
Location: 28938 - 29333 (-)
Gene ID: HRGMv2_4105_1_24
Type: TC
Location: 29330 - 30559 (-)
Type: TC
Location: 29330 - 30559 (-)
Gene ID: HRGMv2_4105_1_25
Type: TC
Location: 30549 - 32600 (-)
Type: TC
Location: 30549 - 32600 (-)
Gene ID: HRGMv2_4105_1_26
Type: TC
Location: 32600 - 34099 (-)
Type: TC
Location: 32600 - 34099 (-)
Gene ID: HRGMv2_4105_1_27
Type: TC
Location: 34101 - 35060 (-)
Type: TC
Location: 34101 - 35060 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Borkfalkiaceae
Genus
Borkfalkia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.