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Cluster: HRGMv2_4100_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4100_44 HRGMv2_4100_44_6 5402 7744 - GH39
TC HRGMv2_4100_44 HRGMv2_4100_44_7 8087 9589 + 3.A.1.2.13
TC HRGMv2_4100_44 HRGMv2_4100_44_8 9605 10657 + 3.A.1.2.13
NULL(UNKNOWN) HRGMv2_4100_44 HRGMv2_4100_44_9 10697 11920 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_4100_44 HRGMv2_4100_44_10 12024 13055 + BPD_transp_2
CAZyme HRGMv2_4100_44 HRGMv2_4100_44_11 13160 14698 + GH39
CAZyme HRGMv2_4100_44 HRGMv2_4100_44_12 14710 16407 + GH3
CAZyme HRGMv2_4100_44 HRGMv2_4100_44_13 16458 18278 + GH2
Gene ID: HRGMv2_4100_44_6
Type: CAZyme
Location: 5402 - 7744 (-)
Gene ID: HRGMv2_4100_44_7
Type: TC
Location: 8087 - 9589 (+)
Gene ID: HRGMv2_4100_44_8
Type: TC
Location: 9605 - 10657 (+)
Gene ID: HRGMv2_4100_44_9
Type:
Location: 10697 - 11920 (+)
Gene ID: HRGMv2_4100_44_10
Type: pfam
Location: 12024 - 13055 (+)
Gene ID: HRGMv2_4100_44_11
Type: CAZyme
Location: 13160 - 14698 (+)
Gene ID: HRGMv2_4100_44_12
Type: CAZyme
Location: 14710 - 16407 (+)
Gene ID: HRGMv2_4100_44_13
Type: CAZyme
Location: 16458 - 18278 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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