Cluster: HRGMv2_4100_CGC6
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4100
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4100_26 | HRGMv2_4100_26_13 | 11971 | 12822 | + | GT8 |
| TC | HRGMv2_4100_26 | HRGMv2_4100_26_14 | 12847 | 13089 | + | 3.A.1.105.9 |
| TC | HRGMv2_4100_26 | HRGMv2_4100_26_15 | 13134 | 13811 | + | 3.A.1.105.3 |
| pfam | HRGMv2_4100_26 | HRGMv2_4100_26_16 | 13798 | 14814 | + | ABC2_membrane | ABC2_membrane_3 |
| pfam | HRGMv2_4100_26 | HRGMv2_4100_26_17 | 15247 | 20877 | + | DUF3320 | AAA_11 | AAA_11 | AAA_12 | DUF4011 | MTES_1575 |
| TC | HRGMv2_4100_26 | HRGMv2_4100_26_18 | 20895 | 22997 | + | 3.A.11.1.3 |
Gene ID: HRGMv2_4100_26_13
Type: CAZyme
Location: 11971 - 12822 (+)
Type: CAZyme
Location: 11971 - 12822 (+)
Gene ID: HRGMv2_4100_26_14
Type: TC
Location: 12847 - 13089 (+)
Type: TC
Location: 12847 - 13089 (+)
Gene ID: HRGMv2_4100_26_15
Type: TC
Location: 13134 - 13811 (+)
Type: TC
Location: 13134 - 13811 (+)
Gene ID: HRGMv2_4100_26_16
Type: pfam
Location: 13798 - 14814 (+)
Type: pfam
Location: 13798 - 14814 (+)
Gene ID: HRGMv2_4100_26_17
Type: pfam
Location: 15247 - 20877 (+)
Type: pfam
Location: 15247 - 20877 (+)
Gene ID: HRGMv2_4100_26_18
Type: TC
Location: 20895 - 22997 (+)
Type: TC
Location: 20895 - 22997 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Borkfalkiaceae
Genus
Coproplasma
Species
Coproplasma sp949282385
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.