Cluster: HRGMv2_4100_CGC3
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_4100
- CGC Family ID: CGCFAM_00036
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4100_18 | HRGMv2_4100_18_28 | 26877 | 28019 | + | GT4 |
| CAZyme | HRGMv2_4100_18 | HRGMv2_4100_18_29 | 28006 | 28872 | + | GT8 |
| CAZyme | HRGMv2_4100_18 | HRGMv2_4100_18_30 | 28879 | 29631 | + | GT32 |
| CAZyme | HRGMv2_4100_18 | HRGMv2_4100_18_31 | 29633 | 30385 | + | GT111 |
| pfam | HRGMv2_4100_18 | HRGMv2_4100_18_32 | 30406 | 31500 | + | FAD_binding_2 | Amino_oxidase | GLF | NAD_binding_8 |
| TC | HRGMv2_4100_18 | HRGMv2_4100_18_33 | 31700 | 32530 | + | 9.B.18.1.2 |
Gene ID: HRGMv2_4100_18_28
Type: CAZyme
Location: 26877 - 28019 (+)
Type: CAZyme
Location: 26877 - 28019 (+)
Gene ID: HRGMv2_4100_18_29
Type: CAZyme
Location: 28006 - 28872 (+)
Type: CAZyme
Location: 28006 - 28872 (+)
Gene ID: HRGMv2_4100_18_30
Type: CAZyme
Location: 28879 - 29631 (+)
Type: CAZyme
Location: 28879 - 29631 (+)
Gene ID: HRGMv2_4100_18_31
Type: CAZyme
Location: 29633 - 30385 (+)
Type: CAZyme
Location: 29633 - 30385 (+)
Gene ID: HRGMv2_4100_18_32
Type: pfam
Location: 30406 - 31500 (+)
Type: pfam
Location: 30406 - 31500 (+)
Gene ID: HRGMv2_4100_18_33
Type: TC
Location: 31700 - 32530 (+)
Type: TC
Location: 31700 - 32530 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Borkfalkiaceae
Genus
Coproplasma
Species
Coproplasma sp949282385
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.