Cluster: HRGMv2_4096_CGC26
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_4096
- CGC Family ID: CGCFAM_00007
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4096_64 | HRGMv2_4096_64_1 | 358 | 855 | + | GT8 |
| CAZyme | HRGMv2_4096_64 | HRGMv2_4096_64_2 | 1173 | 2246 | + | GT2 |
| pfam | HRGMv2_4096_64 | HRGMv2_4096_64_3 | 2503 | 4158 | + | DUF6020 |
| CAZyme | HRGMv2_4096_64 | HRGMv2_4096_64_4 | 4155 | 5204 | + | GT2 |
| pfam | HRGMv2_4096_64 | HRGMv2_4096_64_5 | 5299 | 6483 | + | UDPG_MGDP_dh | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N |
| pfam | HRGMv2_4096_64 | HRGMv2_4096_64_6 | 6490 | 7266 | + | ABC2_membrane |
| TC | HRGMv2_4096_64 | HRGMv2_4096_64_7 | 7281 | 8018 | + | 3.A.1.103.5 |
| CAZyme | HRGMv2_4096_64 | HRGMv2_4096_64_8 | 8025 | 8822 | + | GT111 |
| TC | HRGMv2_4096_64 | HRGMv2_4096_64_9 | 9015 | 10625 | - | 3.A.1.5.2 |
| NULL(UNKNOWN) | HRGMv2_4096_64 | HRGMv2_4096_64_10 | 10642 | 10776 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4096_64 | HRGMv2_4096_64_11 | 11048 | 11971 | + | 3.A.1.5.2 |
| TC | HRGMv2_4096_64 | HRGMv2_4096_64_12 | 12025 | 12930 | + | 3.A.1.5.2 |
| TC | HRGMv2_4096_64 | HRGMv2_4096_64_13 | 12998 | 13996 | + | 3.A.1.5.2 |
| TC | HRGMv2_4096_64 | HRGMv2_4096_64_14 | 13993 | 14970 | + | 3.A.1.5.20 |
Gene ID: HRGMv2_4096_64_1
Type: CAZyme
Location: 358 - 855 (+)
Type: CAZyme
Location: 358 - 855 (+)
Gene ID: HRGMv2_4096_64_2
Type: CAZyme
Location: 1173 - 2246 (+)
Type: CAZyme
Location: 1173 - 2246 (+)
Gene ID: HRGMv2_4096_64_3
Type: pfam
Location: 2503 - 4158 (+)
Type: pfam
Location: 2503 - 4158 (+)
Gene ID: HRGMv2_4096_64_4
Type: CAZyme
Location: 4155 - 5204 (+)
Type: CAZyme
Location: 4155 - 5204 (+)
Gene ID: HRGMv2_4096_64_5
Type: pfam
Location: 5299 - 6483 (+)
Type: pfam
Location: 5299 - 6483 (+)
Gene ID: HRGMv2_4096_64_6
Type: pfam
Location: 6490 - 7266 (+)
Type: pfam
Location: 6490 - 7266 (+)
Gene ID: HRGMv2_4096_64_7
Type: TC
Location: 7281 - 8018 (+)
Type: TC
Location: 7281 - 8018 (+)
Gene ID: HRGMv2_4096_64_8
Type: CAZyme
Location: 8025 - 8822 (+)
Type: CAZyme
Location: 8025 - 8822 (+)
Gene ID: HRGMv2_4096_64_9
Type: TC
Location: 9015 - 10625 (-)
Type: TC
Location: 9015 - 10625 (-)
Gene ID: HRGMv2_4096_64_10
Type:
Location: 10642 - 10776 (-)
Type:
Location: 10642 - 10776 (-)
Gene ID: HRGMv2_4096_64_11
Type: TC
Location: 11048 - 11971 (+)
Type: TC
Location: 11048 - 11971 (+)
Gene ID: HRGMv2_4096_64_12
Type: TC
Location: 12025 - 12930 (+)
Type: TC
Location: 12025 - 12930 (+)
Gene ID: HRGMv2_4096_64_13
Type: TC
Location: 12998 - 13996 (+)
Type: TC
Location: 12998 - 13996 (+)
Gene ID: HRGMv2_4096_64_14
Type: TC
Location: 13993 - 14970 (+)
Type: TC
Location: 13993 - 14970 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Aristaeellaceae
Genus
Ventricola
Species
Ventricola intestinavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.