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Cluster: HRGMv2_4096_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4096_33 HRGMv2_4096_33_13 14609 15973 - GH1
CAZyme HRGMv2_4096_33 HRGMv2_4096_33_14 16144 17628 - CE20
CAZyme HRGMv2_4096_33 HRGMv2_4096_33_15 17630 18805 - GH130_1
pfam HRGMv2_4096_33 HRGMv2_4096_33_16 18792 20000 - GlcNAc_2-epim
pfam HRGMv2_4096_33 HRGMv2_4096_33_17 19964 21661 - PGM_PMM_IV | PGM_PMM_I | PGM_PMM_II | PGM_PMM_III
CAZyme HRGMv2_4096_33 HRGMv2_4096_33_18 21645 22742 - CE2
CAZyme HRGMv2_4096_33 HRGMv2_4096_33_19 22764 23276 - GH130_2
CAZyme HRGMv2_4096_33 HRGMv2_4096_33_20 23276 23782 - GH130_2
TC HRGMv2_4096_33 HRGMv2_4096_33_21 23875 24747 - 3.A.1.1.18
TC HRGMv2_4096_33 HRGMv2_4096_33_22 24760 25185 - 3.A.1.1.20
Gene ID: HRGMv2_4096_33_13
Type: CAZyme
Location: 14609 - 15973 (-)
Gene ID: HRGMv2_4096_33_14
Type: CAZyme
Location: 16144 - 17628 (-)
Gene ID: HRGMv2_4096_33_15
Type: CAZyme
Location: 17630 - 18805 (-)
Gene ID: HRGMv2_4096_33_16
Type: pfam
Location: 18792 - 20000 (-)
Gene ID: HRGMv2_4096_33_17
Type: pfam
Location: 19964 - 21661 (-)
Gene ID: HRGMv2_4096_33_18
Type: CAZyme
Location: 21645 - 22742 (-)
Gene ID: HRGMv2_4096_33_19
Type: CAZyme
Location: 22764 - 23276 (-)
Gene ID: HRGMv2_4096_33_20
Type: CAZyme
Location: 23276 - 23782 (-)
Gene ID: HRGMv2_4096_33_21
Type: TC
Location: 23875 - 24747 (-)
Gene ID: HRGMv2_4096_33_22
Type: TC
Location: 24760 - 25185 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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