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Cluster: HRGMv2_4063_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4063_7 HRGMv2_4063_7_14 15116 15826 + 9.B.18.1.1
CAZyme HRGMv2_4063_7 HRGMv2_4063_7_15 15864 16706 + GT2
pfam HRGMv2_4063_7 HRGMv2_4063_7_16 16712 17926 + Glyphos_transf
pfam HRGMv2_4063_7 HRGMv2_4063_7_17 17923 19101 + Wzy_C
CAZyme HRGMv2_4063_7 HRGMv2_4063_7_18 19098 19820 + GT32
CAZyme HRGMv2_4063_7 HRGMv2_4063_7_19 19820 20692 + GT2
TC HRGMv2_4063_7 HRGMv2_4063_7_20 20720 22423 + 2.A.66.1.40
CAZyme HRGMv2_4063_7 HRGMv2_4063_7_21 22426 23508 - GT2
pfam HRGMv2_4063_7 HRGMv2_4063_7_22 23612 24457 + 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4
CAZyme HRGMv2_4063_7 HRGMv2_4063_7_23 24604 26763 - GH112
TF HRGMv2_4063_7 HRGMv2_4063_7_24 26911 27696 + HTH_AraC | HTH_AraC
TC HRGMv2_4063_7 HRGMv2_4063_7_25 27899 29320 + 9.A.11.1.2
pfam HRGMv2_4063_7 HRGMv2_4063_7_26 29305 30453 + Spore_permease
pfam HRGMv2_4063_7 HRGMv2_4063_7_27 30635 31840 + Spore_GerAC
TC HRGMv2_4063_7 HRGMv2_4063_7_28 31844 34543 - 3.A.1.122.2
Gene ID: HRGMv2_4063_7_14
Type: TC
Location: 15116 - 15826 (+)
Gene ID: HRGMv2_4063_7_15
Type: CAZyme
Location: 15864 - 16706 (+)
Gene ID: HRGMv2_4063_7_16
Type: pfam
Location: 16712 - 17926 (+)
Gene ID: HRGMv2_4063_7_17
Type: pfam
Location: 17923 - 19101 (+)
Gene ID: HRGMv2_4063_7_18
Type: CAZyme
Location: 19098 - 19820 (+)
Gene ID: HRGMv2_4063_7_19
Type: CAZyme
Location: 19820 - 20692 (+)
Gene ID: HRGMv2_4063_7_20
Type: TC
Location: 20720 - 22423 (+)
Gene ID: HRGMv2_4063_7_21
Type: CAZyme
Location: 22426 - 23508 (-)
Gene ID: HRGMv2_4063_7_22
Type: pfam
Location: 23612 - 24457 (+)
Gene ID: HRGMv2_4063_7_23
Type: CAZyme
Location: 24604 - 26763 (-)
Gene ID: HRGMv2_4063_7_24
Type: TF
Location: 26911 - 27696 (+)
Gene ID: HRGMv2_4063_7_25
Type: TC
Location: 27899 - 29320 (+)
Gene ID: HRGMv2_4063_7_26
Type: pfam
Location: 29305 - 30453 (+)
Gene ID: HRGMv2_4063_7_27
Type: pfam
Location: 30635 - 31840 (+)
Gene ID: HRGMv2_4063_7_28
Type: TC
Location: 31844 - 34543 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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