Cluster: HRGMv2_4063_CGC14
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_4063
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4063_39 | HRGMv2_4063_39_7 | 5696 | 7102 | - | GH20 |
| TF | HRGMv2_4063_39 | HRGMv2_4063_39_8 | 7233 | 7979 | + | HTH_AraC | HTH_AraC |
| TC | HRGMv2_4063_39 | HRGMv2_4063_39_9 | 8376 | 11024 | - | 3.A.3.2.5 |
| CAZyme | HRGMv2_4063_39 | HRGMv2_4063_39_10 | 11105 | 12478 | - | CE2 |
| pfam | HRGMv2_4063_39 | HRGMv2_4063_39_11 | 12844 | 13800 | - | AP_endonuc_2 |
| CAZyme | HRGMv2_4063_39 | HRGMv2_4063_39_12 | 13818 | 14894 | - | GH179 |
| CAZyme | HRGMv2_4063_39 | HRGMv2_4063_39_13 | 14951 | 15982 | - | GH179 |
Gene ID: HRGMv2_4063_39_7
Type: CAZyme
Location: 5696 - 7102 (-)
Type: CAZyme
Location: 5696 - 7102 (-)
Gene ID: HRGMv2_4063_39_8
Type: TF
Location: 7233 - 7979 (+)
Type: TF
Location: 7233 - 7979 (+)
Gene ID: HRGMv2_4063_39_9
Type: TC
Location: 8376 - 11024 (-)
Type: TC
Location: 8376 - 11024 (-)
Gene ID: HRGMv2_4063_39_10
Type: CAZyme
Location: 11105 - 12478 (-)
Type: CAZyme
Location: 11105 - 12478 (-)
Gene ID: HRGMv2_4063_39_11
Type: pfam
Location: 12844 - 13800 (-)
Type: pfam
Location: 12844 - 13800 (-)
Gene ID: HRGMv2_4063_39_12
Type: CAZyme
Location: 13818 - 14894 (-)
Type: CAZyme
Location: 13818 - 14894 (-)
Gene ID: HRGMv2_4063_39_13
Type: CAZyme
Location: 14951 - 15982 (-)
Type: CAZyme
Location: 14951 - 15982 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Pumilibacteraceae
Genus
HGM11386
Species
HGM11386 sp949294845
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.